View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17743_low_46 (Length: 237)
Name: NF17743_low_46
Description: NF17743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17743_low_46 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 7413658 - 7413866
Alignment:
| Q |
1 |
acttacatcatggtggtagacgtcatacatagtgtgtttgttatagtggtacatctgacgttgccgtgcatttgagcaaaagcttgtattcttagcttca |
100 |
Q |
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| T |
7413658 |
acttacatcatggtggtagacgtcatacatagtgtgtttgttatagtggtacatctgacgttgccgtgcgtttgagcaaaagcttgtattcttaacttca |
7413757 |
T |
|
| Q |
101 |
caaaatggtggtaaaaaatgcattgggatgcgagaatgctaaacgaaacgttaaaccaaacaatgcaatagtgtctttggtggatatacaacgagatcat |
200 |
Q |
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| T |
7413758 |
caaaatggtggtaaaaaatgcattgggatgcgagaatgctaaacg------------aaacaatgcaatagtgtctttggtggatatacaacgagatcat |
7413845 |
T |
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| Q |
201 |
accatccacaatagaagcatc |
221 |
Q |
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| T |
7413846 |
accatccacaatagaagcatc |
7413866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 37 - 167
Target Start/End: Original strand, 8297071 - 8297201
Alignment:
| Q |
37 |
tttgttatagtggtacatctgacgttgccgtgcatttgagcaaaagcttgtattcttagcttcacaaaatggtggtaaaaaatgcattgggatgcgagaa |
136 |
Q |
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| T |
8297071 |
tttgttttagtggtaaacctgacgtggtcgtgcgtttgagcaaaagcttgtattcttagcttcacaaaatggtggtcaaaaaggcattgggacacgagaa |
8297170 |
T |
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| Q |
137 |
tgctaaacgaaacgttaaaccaaacaatgca |
167 |
Q |
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| T |
8297171 |
tgctaatctaaatgctaaaccaaacaatgca |
8297201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 32 - 165
Target Start/End: Complemental strand, 31440828 - 31440695
Alignment:
| Q |
32 |
gtgtgtttgttatagtggtacatctgacgttgccgtgcatttgagcaaaagcttgtattcttagcttcacaaaatggtggtaaaaaatgcattgggatgc |
131 |
Q |
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| T |
31440828 |
gtgtgtttgttttagtggttaacctgatgctgctgtgcggttgcgcaaaaacttgtattcttagcttcacagaatggtggtaaaaaaggcattgggatgc |
31440729 |
T |
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| Q |
132 |
gagaatgctaaacgaaacgttaaaccaaacaatg |
165 |
Q |
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| T |
31440728 |
gagaatgctaatttaaacgctaaaccaaacaatg |
31440695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 62 - 160
Target Start/End: Original strand, 33376233 - 33376331
Alignment:
| Q |
62 |
tgccgtgcatttgagcaaaagcttgtattcttagcttcacaaaatggtggtaaaaaatgcattgggatgcgagaatgctaaacgaaacgttaaaccaaa |
160 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||| || | |||||||||| ||||||||||||||| |
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| T |
33376233 |
tgccgtgcgtttgagcaaaagcttgtattcttagcttcacaaaatggtggtcaaaaaggcattgagactccagaatgctaatttaaacgttaaaccaaa |
33376331 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 32 - 170
Target Start/End: Complemental strand, 33684298 - 33684160
Alignment:
| Q |
32 |
gtgtgtttgttatagtggtacatctgacgttgccgtgcatttgagcaaaagcttgtattcttagcttcacaaaatggtggtaaaaaatgcattgggatgc |
131 |
Q |
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||||||||||| |||||||| | ||||| |||| ||| ||||||||||| |||||||||||| ||||||||||| ||||| ||||| | |||| || | |
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| T |
33684298 |
gtgtgtttgttttagtggtaaacttgacgctgccttgcgtttgagcaaaatcttgtattcttaacttcacaaaatagtggtcaaaaaggtattgagacac |
33684199 |
T |
|
| Q |
132 |
gagaatgctaaacgaaacgttaaaccaaacaatgcaata |
170 |
Q |
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|| |||| ||| | ||||| |||||||| |||||||||| |
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| T |
33684198 |
gataatgttaatctaaacgctaaaccaagcaatgcaata |
33684160 |
T |
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