View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17743_low_47 (Length: 236)
Name: NF17743_low_47
Description: NF17743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17743_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 10 - 221
Target Start/End: Complemental strand, 35950597 - 35950388
Alignment:
| Q |
10 |
catcatcatctccaaagaaacattnnnnnnnttgagaaagagtgtacccgatagaggagaagtaaagttgcggaaagctttcatagcagcttggttttga |
109 |
Q |
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| T |
35950597 |
catcatcatctccaaagaaacattaaaaaaattgagaaagagt--acccgatagaggagaagtaaagttgcggaaagctttcatagcagcttggttttga |
35950500 |
T |
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| Q |
110 |
gcttctttggcggaattgaaagcatcagaagaagaaaaggtgacaccattgacatgaacagaggcattaaagcttggcttgtgttgtggaccgtcattcg |
209 |
Q |
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| T |
35950499 |
gcttctttggcggaattgaaagcatcagaagaagcaaaggtgacaccattgacatgaacagaggcattaaagcttggcttgtgttgcggaccgtcattcg |
35950400 |
T |
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| Q |
210 |
tggcagtgtatt |
221 |
Q |
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|||||||||||| |
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| T |
35950399 |
tggcagtgtatt |
35950388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 59 - 205
Target Start/End: Complemental strand, 35955360 - 35955214
Alignment:
| Q |
59 |
gatagaggagaagtaaagttgcggaaagctttcatagcagcttggttttgagcttctttggcggaattgaaagcatcagaagaagaaaaggtgacaccat |
158 |
Q |
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|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||| | ||||||||||| |||||| | |||| |
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| T |
35955360 |
gataaaggagaagtgaagttgcggaaagctttcatagcagcttggttttgagcttctccggaggaattgaaggtatcagaagaagtaaaggtaaggccat |
35955261 |
T |
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| Q |
159 |
tgacatgaacagaggcattaaagcttggcttgtgttgtggaccgtca |
205 |
Q |
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| T |
35955260 |
tcacaaaaacagagcccttaaagcttggattgtgtggtggaccgtca |
35955214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 64 - 201
Target Start/End: Complemental strand, 35977976 - 35977839
Alignment:
| Q |
64 |
aggagaagtaaagttgcggaaagctttcatagcagcttggttttgagcttctttggcggaattgaaagcatcagaagaagaaaaggtgacaccattgaca |
163 |
Q |
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| T |
35977976 |
aggataagaaaagttgagcaaagctttcatagcagcttggttgtgagcttctttggaggaatgaaaaatatcagaagaagtaaaggttaaaccattgaca |
35977877 |
T |
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| Q |
164 |
tgaacagaggcattaaagcttggcttgtgttgtggacc |
201 |
Q |
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| T |
35977876 |
aagacagagcccttaaaacttggattgtgtggtggacc |
35977839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 64 - 201
Target Start/End: Complemental strand, 35967786 - 35967652
Alignment:
| Q |
64 |
aggagaagtaaagttgcggaaagctttcatagcagcttggttttgagcttctttggcggaattgaaagcatcagaagaagaaaaggtgacaccattgaca |
163 |
Q |
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| T |
35967786 |
aggagaagaaaagttgagcaaagctttcagagcagcttggttgtgagcttctttggaggaatgaaaagcatca---gaagtaaaggttaaaccattgaca |
35967690 |
T |
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| Q |
164 |
tgaacagaggcattaaagcttggcttgtgttgtggacc |
201 |
Q |
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|||||| | ||||||||||| |||||| ||||||| |
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| T |
35967689 |
aagacagagcccttaaagcttggtttgtgtggtggacc |
35967652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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