View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17743_low_48 (Length: 234)
Name: NF17743_low_48
Description: NF17743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17743_low_48 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 21 - 234
Target Start/End: Complemental strand, 46640455 - 46640242
Alignment:
| Q |
21 |
ggagaaggtgaaggtggttgaaactattggggagtgaaccatagaaacggtttgagtttatgtggaaaagagctaagtctattaaaagaccaagttcttc |
120 |
Q |
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| T |
46640455 |
ggagaaggtgaaggtggttgaaactattggggagtgaaccatagaaacggtttgagtttatgtggaaaagagctatgtctgttaaaagaccaagttcttc |
46640356 |
T |
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| Q |
121 |
tggtaatgaacctgctatgtttgcatggtttatgtctataccagcaacggtattgatgtaaggatcatctagtgacggtgcacaaaagatacctgtgtag |
220 |
Q |
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| T |
46640355 |
tggtaatgaacctgctatgtttgcatggtttatgtctataccagcaacggtattgatgtaaggatcatctagtgacggtgcacaaaagatacctgtgtag |
46640256 |
T |
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| Q |
221 |
ttgcatacatttgg |
234 |
Q |
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|||||||||||||| |
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| T |
46640255 |
ttgcatacatttgg |
46640242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 21 - 234
Target Start/End: Complemental strand, 46642747 - 46642534
Alignment:
| Q |
21 |
ggagaaggtgaaggtggttgaaactattggggagtgaaccatagaaacggtttgagtttatgtggaaaagagctaagtctattaaaagaccaagttcttc |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
46642747 |
ggagaaggtgaaggtggttgaaactattggggagtgaaccatagaaacggtttgagtttatgtggaaaagagctatgtctgttaaaagaccaagttcttc |
46642648 |
T |
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| Q |
121 |
tggtaatgaacctgctatgtttgcatggtttatgtctataccagcaacggtattgatgtaaggatcatctagtgacggtgcacaaaagatacctgtgtag |
220 |
Q |
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| T |
46642647 |
tggtaatgaacctgctatgtttgcatggtttatgtctataccagcaacggtattgatgtaaggatcatctagtgacggtgcacaaatgatacctgtgtag |
46642548 |
T |
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| Q |
221 |
ttgcatacatttgg |
234 |
Q |
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| T |
46642547 |
ttgcatacatttgg |
46642534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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