View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17743_low_49 (Length: 231)
Name: NF17743_low_49
Description: NF17743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17743_low_49 |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 7333421 - 7333217
Alignment:
| Q |
16 |
tcttccccacacctttcatccccacaattgaaagtgtggaaggattactaccgctccctgtggtcaactttgagaccaaatctcgttcttcttttttaca |
115 |
Q |
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| T |
7333421 |
tcttccccacacctttcatccccacaatggaaagtgcggaaggattactaccactccctgaggtcaactttgagaccaaatcttgctcttcttttttaca |
7333322 |
T |
|
| Q |
116 |
accaactaatttggttgactcctgtctatcaatggtgcaagtttttattaatttatcaagaagattgatagcatttcctatctgactttgatattccaca |
215 |
Q |
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||||||||||||||||||||||||||| | |||||||||||||||||||| || | |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7333321 |
accaactaatttggttgactcctgtcttttgatggtgcaagtttttattaaattctgaagaagattgatagcatttcctatctcactttgatattccaca |
7333222 |
T |
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| Q |
216 |
ggttc |
220 |
Q |
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||||| |
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| T |
7333221 |
ggttc |
7333217 |
T |
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