View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17743_low_5 (Length: 645)
Name: NF17743_low_5
Description: NF17743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17743_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 590; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 11 - 632
Target Start/End: Original strand, 26356267 - 26356888
Alignment:
| Q |
11 |
cacagatattgccatgtggatattatacccttttaatggaccaggaagagcaaaagtgaagtttataaatgttaaattagggaaaataggtgaacatatt |
110 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26356267 |
cacagatattgccatgtggattttttacccttttaatggaccaggaagagcaaaagtgaagtttataaatgttaaattagggaaaataggtgaacatatt |
26356366 |
T |
|
| Q |
111 |
ggtgattgggagcatgtgacattaagggtaagtaatttggatggtaaattatggcatgtatatttttcacaacatagtaaaggtgaatggattgattctt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26356367 |
ggtgattgggagcatgtgacattaagggtaagtaatttggatggtaaattatggcatttatatttctcacaacatagtaaaggtgaatggattgattctt |
26356466 |
T |
|
| Q |
211 |
ctcagcttgagtttcaaacaaatagacctgttttttattcttcattgcatggtcatgcatcatatccacatgaaggactagttcttcaagggaaaagtgg |
310 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
26356467 |
ctcagcttgagtttcaatcaaatagacctgttttttattcttcattgcatggtcatgcatcatatccacatgaaggactagttcttcaagggaaaaatgg |
26356566 |
T |
|
| Q |
311 |
aataggtattagaaatgatagtgctaagagtgaaatgattttggatttgacaaaatttgtattgatttctgctgattatttagggccttttgttatagag |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26356567 |
aataggtattagaaatgatagtgctaagagtgaaatgattttggatttgacaaaatttgtattgatttctgctgattatttagggtcttttgttatagag |
26356666 |
T |
|
| Q |
411 |
ccaccttggttgcactattttaggaaatggggtccaaaaattgattataatatagatgaggagttgaggaaagtggagaagatattgccggggaaactaa |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26356667 |
ccaccttggttgcactattttaggaaatggggtccaaaaattgattataatatagatgaggagttgaggaaagtggagaagatattgccagggaaactaa |
26356766 |
T |
|
| Q |
511 |
aagatatttttgaaaatattattaggagtttaccagaagaagtgctgggagaggaaggacccacaggtccaaagctgaagaataattggagtggagatga |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26356767 |
aagatatttttgaaaatattattaggagtttaccagaagaagtgctgggagaggaaggacccacaggtccaaagctgaagaataattggagtggagatga |
26356866 |
T |
|
| Q |
611 |
agtttgaatatattatactcct |
632 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
26356867 |
agtttgaatatattatactcct |
26356888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 15 - 617
Target Start/End: Complemental strand, 26348157 - 26347540
Alignment:
| Q |
15 |
gatattgccatgtggatattatacccttttaatggaccaggaagagcaaaagtgaagtttataaatgttaaattagggaaaataggtgaacatattggtg |
114 |
Q |
| |
|
||||||||||||||| | || ||||||||||||||||| || |||||||||||| |||| ||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
26348157 |
gatattgccatgtgggttttttacccttttaatggacctgggagagcaaaagtggagttcttaaatgtgaaattagggaaaataggtgaacatgttggtg |
26348058 |
T |
|
| Q |
115 |
attgggagcatgtgacattaagggtaagtaatttggatggtaaattatggcatgtatatttttcacaacatagtaaaggtgaatggattgattcttctca |
214 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| | ||| |||||||||||| || || |
|
|
| T |
26348057 |
attgggagcacgtgacattaagggtaagtaatttggatggtcaattatggcatgtatatttctcacaacataatcttggttcatggattgattcatccca |
26347958 |
T |
|
| Q |
215 |
gcttgagtttca---------------aacaaatagacctgttttttattcttcattgcatggtcatgcatcatatccacatgaaggactagttcttcaa |
299 |
Q |
| |
|
|||||||| || |||||| ||||||||| | ||| ||||||||||||||||||||||||||||||||| || || ||||| | | |
|
|
| T |
26347957 |
acttgagttccaagatggaataggtgcaacaaaaagacctgttgtctatgcttcattgcatggtcatgcatcatatccacatgctggtcttgttctacta |
26347858 |
T |
|
| Q |
300 |
gggaaaagtggaataggtattagaaatgatagtgctaagagtga-aatgattttggatttgacaaaatttgtattgatttctgctgattatttagggcct |
398 |
Q |
| |
|
||||||| |||||||||| ||| |||||| | ||| | | |||| || ||||| || ||||||||||||| ||||||| || ||||||||| || |
|
|
| T |
26347857 |
gggaaaaatggaataggtgcaagagatgatactaataaaggaaagaatg-ttatggatatgggaaaatttgtattggtttctgcagagtatttagggtct |
26347759 |
T |
|
| Q |
399 |
tttgttatagagccaccttggttgcactattttaggaaatggggtccaaaaattgattataatatagatgaggagttgaggaaagtggagaagatattgc |
498 |
Q |
| |
|
|||| ||||||| | |||||| | ||||||||| ||||||||||| | | || |||| | ||||||| ||||||| ||| || |||||| |||||| |
|
|
| T |
26347758 |
gaagttaaagagccagcatggttgaattattttagggaatggggtccacacgtggactatagtctagatgatgagttgaagaatgttgagaagttattgc |
26347659 |
T |
|
| Q |
499 |
cggggaaactaaaagatatttttgaaaatattattaggagtttaccagaagaagtgctgggagaggaaggacccacaggtccaaagctgaagaataattg |
598 |
Q |
| |
|
| ||||| ||||| | ||||||| |||||||||||||||||||| |||||| | ||||||||| |||||| ||||||||||||| ||||||||||| |
|
|
| T |
26347658 |
ctgggaagttaaaaaacggttttgaagatattattaggagtttaccaaaagaagcgttgggagaggcaggaccaacaggtccaaagcaaaagaataattg |
26347559 |
T |
|
| Q |
599 |
gagtggagatgaagtttga |
617 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
26347558 |
gagtggtgatgaagtttga |
26347540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 15 - 228
Target Start/End: Complemental strand, 26332924 - 26332711
Alignment:
| Q |
15 |
gatattgccatgtggatattatacccttttaatggaccaggaagagcaaaagtgaagtttataaatgttaaattagggaaaataggtgaacatattggtg |
114 |
Q |
| |
|
||||||||||||||| | || |||||||| |||||||| | || ||| ||| | |||||||||||||||||||| || ||| ||||||||||| |||||| |
|
|
| T |
26332924 |
gatattgccatgtgggttttttaccctttcaatggacctgcaaaagctaaaataaagtttataaatgttaaattgggaaaagtaggtgaacatgttggtg |
26332825 |
T |
|
| Q |
115 |
attgggagcatgtgacattaagggtaagtaatttggatggtaaattatggcatgtatatttttcacaacatagtaaaggtgaatggattgattcttctca |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| | ||||||||||| ||||| || ||||||| | ||| |||| ||||| | ||||| |
|
|
| T |
26332824 |
attgggagcatgtgacattaagggtaagtaacttggatggtcagttatggcatgtctatttctctcaacataatggtggttcatgggttgatgcatctca |
26332725 |
T |
|
| Q |
215 |
gcttgagtttcaaa |
228 |
Q |
| |
|
||||||||||||| |
|
|
| T |
26332724 |
acttgagtttcaaa |
26332711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 15 - 228
Target Start/End: Complemental strand, 26338245 - 26338032
Alignment:
| Q |
15 |
gatattgccatgtggatattatacccttttaatggaccaggaagagcaaaagtgaagtttataaatgttaaattagggaaaataggtgaacatattggtg |
114 |
Q |
| |
|
||||||||||||||| | || || ||||| |||||| | |||||||| ||||| |||||||| || ||||||| || ||| |||||||||| |||||| |
|
|
| T |
26338245 |
gatattgccatgtgggttttttatcctttcaatggagctggaagagctaaagtagagtttatagatattaaattgggaaaagcaggtgaacatgttggtg |
26338146 |
T |
|
| Q |
115 |
attgggagcatgtgacattaagggtaagtaatttggatggtaaattatggcatgtatatttttcacaacatagtaaaggtgaatggattgattcttctca |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||| |||||||||||||||| || || ||||| | | ||| ||||||||||||| ||||| |
|
|
| T |
26338145 |
attgggagcatgtgacattaagggtaagtaacttcgatggtcaattatggcatgtatacttctctcaacacaatgctggtaaatggattgattcatctca |
26338046 |
T |
|
| Q |
215 |
gcttgagtttcaaa |
228 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
26338045 |
acttgagttccaaa |
26338032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 362 - 619
Target Start/End: Complemental strand, 26332550 - 26332293
Alignment:
| Q |
362 |
aaaatttgtattgatttctgctgattatttagggccttttgttatagagccaccttggttgcactattttaggaaatggggtccaaaaattgattataat |
461 |
Q |
| |
|
||||| ||||||| |||||||||| ||||| | | || |||| ||||||| | |||||| | | ||||||| ||||||||||| | | || |||| | |
|
|
| T |
26332550 |
aaaatatgtattggtttctgctgagtatttggagtctgaagttaaagagccagcatggttgaatttttttagggaatggggtccacatgtggactatagt |
26332451 |
T |
|
| Q |
462 |
atagatgaggagttgaggaaagtggagaagatattgccggggaaactaaaagatatttttgaaaatattattaggagtttaccagaagaagtgctgggag |
561 |
Q |
| |
|
||||||| ||||||| ||| || |||||| ||||||| ||||| |||||||| |||||||||| ||||||| | |||||||| ||||| ||||||||| |
|
|
| T |
26332450 |
ctagatgatgagttgaagaatgttgagaagttattgcctgggaagttaaaagatgtttttgaaaaaattattatgggtttaccaaaagaattgctgggag |
26332351 |
T |
|
| Q |
562 |
aggaaggacccacaggtccaaagctgaagaataattggagtggagatgaagtttgaat |
619 |
Q |
| |
|
|||||||||| |||||||||||| ||| |||||||| ||| |||||||||||||| |
|
|
| T |
26332350 |
aggaaggaccaacaggtccaaaggaaaagggtaattggaatggtgatgaagtttgaat |
26332293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 217 - 619
Target Start/End: Complemental strand, 26338016 - 26337614
Alignment:
| Q |
217 |
ttgagtttcaaacaaatagacctgttttttattcttcattgcatggtcatgcatcatatccacatgaaggactagttcttcaagggaaaagtggaatagg |
316 |
Q |
| |
|
|||| |||| |||||| |||||| || ||||| |||| |||||||||||||||||||||||||||| || || ||| | |||||||| |||| |||| |
|
|
| T |
26338016 |
ttgattttccaacaaaaagacctattgtttatgcttctttgcatggtcatgcatcatatccacatgctggccttaatctactagggaaaaatggagtagg |
26337917 |
T |
|
| Q |
317 |
tattagaaatgatagtgctaagagt-gaaatgattttggatttgacaaaatttgtattgatttctgctgattatttagggccttttgttatagagccacc |
415 |
Q |
| |
|
| ||| |||||| | ||| || |||||| || ||||| || ||||| ||||||| ||| ||| || ||||||||| || |||| ||||||| | |
|
|
| T |
26337916 |
tgcaagagatgatactaataaaggtagaaatg-ttatggatatgggaaaatatgtattggtttgtgcagaatatttagggtctgaagttaaagagccagc |
26337818 |
T |
|
| Q |
416 |
ttggttgcactattttaggaaatggggtccaaaaattgattataatatagatgaggagttgaggaaagtggagaagatattgccggggaaactaaaagat |
515 |
Q |
| |
|
|||||| | ||||||||| | ||||||||| | ||||| | | || ||||| || |||| ||| |||| ||| ||||| ||||| ||| |||| |
|
|
| T |
26337817 |
atggttgaattattttagggagtggggtccacatattgactttgatctagatattgaattgaagaatgtggctaaggcgttgcctgggaagttaagagat |
26337718 |
T |
|
| Q |
516 |
atttttgaaaatattattaggagtttaccagaagaagtgctgggagaggaaggacccacaggtccaaagctgaagaataattggagtggagatgaagttt |
615 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||| ||| |||||||| ||| |||||| ||| |
|
|
| T |
26337717 |
ggttttgaaaatattattaggagtttaccaaaagaagccttgggagaggaaggaccaacaggtccaaaggaaaagggtaattggaatggtgatgaaattt |
26337618 |
T |
|
| Q |
616 |
gaat |
619 |
Q |
| |
|
|||| |
|
|
| T |
26337617 |
gaat |
26337614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 96 - 211
Target Start/End: Complemental strand, 28315338 - 28315223
Alignment:
| Q |
96 |
ataggtgaacatattggtgattgggagcatgtgacattaagggtaagtaatttggatggtaaattatggcatgtatatttttcacaacatagtaaaggtg |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||||||||||||| |||| | ||| || |||||||||||||||||||| ||| |
|
|
| T |
28315338 |
ataggtgaacatattggtgattgggagcatgtaactttaagggtaagtaatttcaatggagagttaaaaagagtttatttttcacaacatagtaatggtc |
28315239 |
T |
|
| Q |
196 |
aatggattgattcttc |
211 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
28315238 |
aatgggttgattcttc |
28315223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 98 - 270
Target Start/End: Complemental strand, 26324912 - 26324737
Alignment:
| Q |
98 |
aggtgaacatattggtgattgggagcatgtgacattaagggtaagtaatttggatggtaaattatggcatgtatatttttcacaacatagtaaaggtgaa |
197 |
Q |
| |
|
|||||||||| | || || |||||||||||||||||||||||||| || || ||| |||||||| || ||||| ||||||||||| || ||| || |
|
|
| T |
26324912 |
aggtgaacatgtgggagactgggagcatgtgacattaagggtaagcaactttagtggagaattatggatggtttatttatcacaacatagcaagggtcaa |
26324813 |
T |
|
| Q |
198 |
tggattgattcttctcagcttgagtttcaaa---caaatagacctgttttttattcttcattgcatggtcatgcat |
270 |
Q |
| |
|
||| ||||| | | | | ||||||||| ||| ||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
26324812 |
tgggttgatgcatgtgaccttgagtttaaaaatggtaataggcctgtgctttattcttcattgcatggtcatgcat |
26324737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 5e-36; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 71 - 220
Target Start/End: Original strand, 54949390 - 54949539
Alignment:
| Q |
71 |
gtttataaatgttaaattagggaaaataggtgaacatattggtgattgggagcatgtgacattaagggtaagtaatttggatggtaaattatggcatgta |
170 |
Q |
| |
|
|||||||||| ||||||||| || ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
54949390 |
gtttataaatattaaattagagagaataggtgaacatgttggtgactgggagcatgtgacattaagggtaagtaatttggatggtaaattatggaaagtc |
54949489 |
T |
|
| Q |
171 |
tatttttcacaacatagtaaaggtgaatggattgattcttctcagcttga |
220 |
Q |
| |
|
||||| ||||| |||| | |||| |||| ||||||| ||||| ||||| |
|
|
| T |
54949490 |
tatttctcacatcataagacaggttcatgggttgattcctctcaacttga |
54949539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 501 - 619
Target Start/End: Original strand, 54949847 - 54949965
Alignment:
| Q |
501 |
gggaaactaaaagatatttttgaaaatattattaggagtttaccagaagaagtgctgggagaggaaggacccacaggtccaaagctgaagaataattgga |
600 |
Q |
| |
|
||||| |||||| || |||||||||| |||||||| |||||||| ||||| ||||| |||||||||||| |||||||||||| ||||| ||||||| |
|
|
| T |
54949847 |
gggaagctaaaacatgtttttgaaaaagttattaggggtttaccaaaagaaatgctgcaagaggaaggaccaacaggtccaaaggaaaagaaaaattgga |
54949946 |
T |
|
| Q |
601 |
gtggagatgaagtttgaat |
619 |
Q |
| |
|
||| |||||| ||||||| |
|
|
| T |
54949947 |
atggtgatgaactttgaat |
54949965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 217 - 317
Target Start/End: Original strand, 54949563 - 54949663
Alignment:
| Q |
217 |
ttgagtttcaaacaaatagacctgttttttattcttcattgcatggtcatgcatcatatccacatgaaggactagttcttcaagggaaaagtggaatagg |
316 |
Q |
| |
|
|||| |||| |||||| ||||||||| || || ||||||||||||| ||| || |||||||||||| || || ||||| | |||||||| |||||||| |
|
|
| T |
54949563 |
ttgattttccaacaaaaagacctgttgttcatgcttcattgcatggccattcaacatatccacatgctggccttgttctactagggaaaaaaggaatagg |
54949662 |
T |
|
| Q |
317 |
t |
317 |
Q |
| |
|
| |
|
|
| T |
54949663 |
t |
54949663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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