View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17743_low_50 (Length: 229)
Name: NF17743_low_50
Description: NF17743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17743_low_50 |
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| [»] chr8 (4 HSPs) |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 33990478 - 33990250
Alignment:
| Q |
1 |
ttttggattttcaggaacatcgaaaggatgcttgaaaggtggtttagcttcattgaatttgtgttcaaaagtttcatagttgagaagctcaagaatttct |
100 |
Q |
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| T |
33990478 |
ttttggattttcaggaacatcgaaaggacgcttgaaaggtggtttagcttcattgaatttgtgttcaaaagtttcatagttgagaagctcaagaatttct |
33990379 |
T |
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| Q |
101 |
ctggccttataaagtgtctcttcaacatcatttacaataagagattggttctcatcaacaacataggaatcattctcagaagaacatttgcatgcacttt |
200 |
Q |
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| T |
33990378 |
ctggccttataaagtgtctcttcaacatcatttacaataagagattggttctcatcaacaacataggaatcattctcagaagaacatttgcatgcacttt |
33990279 |
T |
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| Q |
201 |
cttctgcatcattttcttctaatagagtc |
229 |
Q |
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| T |
33990278 |
cttctgcatcattttcttctaatagagtc |
33990250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 79 - 226
Target Start/End: Complemental strand, 33959571 - 33959424
Alignment:
| Q |
79 |
gttgagaagctcaagaatttctctggccttataaagtgtctcttcaacatcatttacaataagagattggttctcatcaacaacataggaatcattctca |
178 |
Q |
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|||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33959571 |
gttgagaagctcaagaatttctcttggcttataaagtgtttcttcaacatcatttacaataagagattggttctcatcaacaacataggaatcattctca |
33959472 |
T |
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| Q |
179 |
gaagaacatttgcatgcactttcttctgcatcattttcttctaataga |
226 |
Q |
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| T |
33959471 |
gaagaacatttgcatgcactttctcctgcatcattttcttctattaga |
33959424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 79 - 205
Target Start/End: Complemental strand, 33973573 - 33973447
Alignment:
| Q |
79 |
gttgagaagctcaagaatttctctggccttataaagtgtctcttcaacatcatttacaataagagattggttctcatcaacaacataggaatcattctca |
178 |
Q |
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| T |
33973573 |
gttgagaagctcaagaatttctctggccttgtaaagtgtctcttcgacatcatttacaataagagattggttctcatcaacaacgtaggaatcattctca |
33973474 |
T |
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| Q |
179 |
gaagaacatttgcatgcactttcttct |
205 |
Q |
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| T |
33973473 |
aaagaagatttgcatgcactttcttct |
33973447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 73 - 221
Target Start/End: Complemental strand, 33950936 - 33950782
Alignment:
| Q |
73 |
ttcatagttgagaagctcaagaatttctctggccttataaagtgtctcttcaacatcatttacaataagagattggttctcatcaacaac------atag |
166 |
Q |
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||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||| |||| |
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| T |
33950936 |
ttcatggttgagaagctcaagaatttctctggtcttataaagcgtctcttcaacatcatttacagtaagagattggttctcctcaacaacatagccatag |
33950837 |
T |
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| Q |
167 |
gaatcattctcagaagaacatttgcatgcactttcttctgcatcattttcttcta |
221 |
Q |
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| T |
33950836 |
gaatcattctcagaagaacatgtacatgcactttctcctgcatcattttcttcta |
33950782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 49 - 172
Target Start/End: Complemental strand, 10458 - 10335
Alignment:
| Q |
49 |
ttcattgaatttgtgttcaaaagtttcatagttgagaagctcaagaatttctctggccttataaagtgtctcttcaacatcatttacaataagagattgg |
148 |
Q |
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|||||| ||||| ||||||||| |||| | ||| ||||| |||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||| |
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| T |
10458 |
ttcattaaatttctgttcaaaattttccttgttaagaagttcaagaatttctctggccttgtaaagtgtctctttaacatcatttaccgtaagagattgg |
10359 |
T |
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| Q |
149 |
ttctcatcaacaacataggaatca |
172 |
Q |
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| T |
10358 |
ttatcatcaacgacataggaatca |
10335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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