View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17743_low_59 (Length: 203)
Name: NF17743_low_59
Description: NF17743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17743_low_59 |
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| [»] scaffold0328 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 12 - 185
Target Start/End: Original strand, 15815326 - 15815499
Alignment:
| Q |
12 |
aacctgtgagaagactactgaagtcgtaattaataaacaatcttaatagggttgtgtatgtccttgttatttgtgagtcactatatatctccttgatgca |
111 |
Q |
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| T |
15815326 |
aacctgcgagaagactactgaagtcgtaattaataaacaatcttaatagggttgtgtatgtccttgttatttgtgagtcactatatatctccttgatgca |
15815425 |
T |
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| Q |
112 |
ctgagctagactgttttattgagttgtacgttgttatttgttaacaactctagagattttaagcaaaagtaggt |
185 |
Q |
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| T |
15815426 |
ctgagctagactgttttattgagttgtacgttgttatttgttaacaactctagagattttaagcaaaagtaggt |
15815499 |
T |
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Target: scaffold0328 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0328
Description:
Target: scaffold0328; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 189
Target Start/End: Original strand, 3662 - 3836
Alignment:
| Q |
21 |
gaagactactgaagtcgtaattaat-aaacaatcttaatagggtt--gtgtatgtccttgttatttgtgagtcactatatatctc--cttgatgcactga |
115 |
Q |
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| T |
3662 |
gaagaccactgaagtcgtcattgaggaaagaatcttattagggttttgtgtttgtccttgttatttgtgatccactctttgtgtcaccatgatgcactga |
3761 |
T |
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| Q |
116 |
gctagactgtttta-ttgagttgtacgttgttatttgttaacaactctagagattttaagcaaaagtaggttttg |
189 |
Q |
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| T |
3762 |
gctggactattttagttgagttggaagttgttatttgtgaaccaatctagagtttttaagcaagattaggttttg |
3836 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 164
Target Start/End: Complemental strand, 6442120 - 6442019
Alignment:
| Q |
66 |
tgtatgtccttgttatttgtgag--tcactatatatctccttgatgcactgagctagactgttttattgagttgta-cgttgttatttgttaacaactct |
162 |
Q |
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| T |
6442120 |
tgtatgtccttgttatttgtgagtttctctttgtatcaccttgatgcattgagctggactgtttagttgagttatattattgttatttgtaaaccactct |
6442021 |
T |
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| Q |
163 |
ag |
164 |
Q |
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| T |
6442020 |
ag |
6442019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 124
Target Start/End: Complemental strand, 18386221 - 18386172
Alignment:
| Q |
75 |
ttgttatttgtgagtcactatatatctccttgatgcactgagctagactg |
124 |
Q |
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| T |
18386221 |
ttgttatttgtgagccactatttatcaccttgatgcattgagctggactg |
18386172 |
T |
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