View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17743_low_6 (Length: 589)
Name: NF17743_low_6
Description: NF17743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17743_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 8 - 321
Target Start/End: Complemental strand, 6117190 - 6116882
Alignment:
| Q |
8 |
catcatcaaataaattaatcagaattattatgttgacaaaatcattgataaacacaccgtaattcctacaaaacgtagaatatattttcattgataaaca |
107 |
Q |
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| T |
6117190 |
catcatcaaaaaaattaatcagaattattatgttcacaaaatcattgataaacacaccgtaattcctacacaacgtagaatatattttcattgataaaca |
6117091 |
T |
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| Q |
108 |
tacattcttttcaaatgaatgatctggatcttctgctaagactatcttagatcatgagaatctgatgtttttccaaaaacaccataatgcttaacaagtt |
207 |
Q |
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| T |
6117090 |
tacattcttttcaaatgaatgatctggatcttctgctaagactatcttagatcatgagaatctgatgcttttccaaaaacaccataatgcttaacaagtt |
6116991 |
T |
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| Q |
208 |
tgaaacacaactggcgagagaaaataagacatgacctcaatttgaacaactagtccactatacatttttaattaaatcaattaagaataacaagtatatg |
307 |
Q |
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| T |
6116990 |
tgaaacacaactggcgagagaaaataagacatgacctcaatttgaa-----agtccactatacatttttaattaaatcaattatgaataacaagtatatg |
6116896 |
T |
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| Q |
308 |
gagttagcatcctc |
321 |
Q |
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| T |
6116895 |
gagttagcatcctc |
6116882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 355 - 573
Target Start/End: Complemental strand, 6116880 - 6116662
Alignment:
| Q |
355 |
gaagtggttctcttactatatcctaattttcagaagtcaattcaaactatattgaagctaagagaatcaaa--acacaatgtgaaacagaaacaaaattc |
452 |
Q |
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| T |
6116880 |
gaagtgattctataactatgtcctatttttcaggagtcaattcaaattatattgaaattaaaagaatgaaaatacaaaatatcaagcagaaacaaaattc |
6116781 |
T |
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| Q |
453 |
acaatagtaataaaaggttggtagtatagtaccttcactgcctcaaattttccttgaatattannnnnnngacatgtttaacttggggccagtccgctcc |
552 |
Q |
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| T |
6116780 |
acagtattagttaaaggttggtag--gagtacctttactgcctcaaattttccttcaaaattatgttttggacatgtttaacttggggccaatctactcc |
6116683 |
T |
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| Q |
553 |
tgtttcctcctggcatcgttc |
573 |
Q |
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| T |
6116682 |
tgtttcactctggcatcgttc |
6116662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 290 - 411
Target Start/End: Original strand, 6122464 - 6122589
Alignment:
| Q |
290 |
aagaataacaagtatatggagttagcatcctcaagcataa----gactaccttttcaatgactatatcagaagtggttctcttactatatcctaattttc |
385 |
Q |
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| T |
6122464 |
aagaataacaagtatatggagtcggaatcctcaagcataaataagactatattttcaatgaatatttcagaagtgattctcttactatgttatatttttc |
6122563 |
T |
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| Q |
386 |
agaagtcaattcaaactatattgaag |
411 |
Q |
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| T |
6122564 |
agaagtcaattcaaactgtattgaag |
6122589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 436 - 503
Target Start/End: Original strand, 6122639 - 6122706
Alignment:
| Q |
436 |
aaacagaaacaaaattcacaatagtaataaaaggttggtagtatagtaccttcactgcctcaaatttt |
503 |
Q |
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| T |
6122639 |
aaacagaaacaaaattcacagtattagtaaaaagttggtagtacagtaccttcaccgcctcaaatttt |
6122706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 95 - 185
Target Start/End: Original strand, 6122313 - 6122404
Alignment:
| Q |
95 |
tcattgataaaca-tacattcttttcaaatgaatgatctggatcttctgctaagactatcttagatcatgagaatctgatgtttttccaaaa |
185 |
Q |
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| T |
6122313 |
tcattgataaaaaatacattcttctcgtatgaatgatctggattttatgataagactatcctacatcatgaaaatctgatgtttttgcaaaa |
6122404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 66 - 121
Target Start/End: Complemental strand, 13752957 - 13752902
Alignment:
| Q |
66 |
gtaattcctacaaaacgtagaatatattttcattgataaacatacattcttttcaa |
121 |
Q |
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| T |
13752957 |
gtaattcctacaaaaggttgaatgtattttgattgataaacatacatttttttcaa |
13752902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 208
Target Start/End: Complemental strand, 13752872 - 13752825
Alignment:
| Q |
161 |
atgagaatctgatgtttttccaaaaacaccataatgcttaacaagttt |
208 |
Q |
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| T |
13752872 |
atgaaaatctgatgtttttgcaaaaacaccataaagcttaacatgttt |
13752825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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