View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17743_low_60 (Length: 201)
Name: NF17743_low_60
Description: NF17743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17743_low_60 |
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Alignment Details
Target: chr5 (Bit Score: 99; Significance: 4e-49; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 4e-49
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 40407922 - 40408095
Alignment:
| Q |
20 |
tccacacgttgtctagatgaacttgtaaacatccttgagtgtatgaagatgaaaaatcaacttgtttggccaannnnnnncaaagtggagccttggga-- |
117 |
Q |
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| T |
40407922 |
tccacgcgttgtctagatgaacttgttaacatccttgagtgtatgaagatgaaaaatcaacttgtttggccaattttttttaaagtggagccttgggagg |
40408021 |
T |
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| Q |
118 |
-----aatcagaaaggccggtttggcaaagccatgttgaagttagaaaaatggcttcaaaattaccctcacagg |
186 |
Q |
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| T |
40408022 |
taaggaatcagaaaggccgttttggcgaagccatgttgaagttagaaaaatggcttcaaaattatccttacagg |
40408095 |
T |
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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 40458305 - 40458233
Alignment:
| Q |
20 |
tccacacgttgtctagatgaacttgtaaacatccttgagtgtatgaagatgaaaaatcaacttgtttggccaa |
92 |
Q |
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| T |
40458305 |
tccacacgttgcctcaacgaacttgtgatcatccttcagtgtatgaagatgaaaaaccagcttgtttggccaa |
40458233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 40256880 - 40256817
Alignment:
| Q |
29 |
tgtctagatgaacttgtaaacatccttgagtgtatgaagatgaaaaatcaacttgtttggccaa |
92 |
Q |
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| T |
40256880 |
tgtctcgatgaacttgttaagattcttgagtgtatgaaaatgaagaatcaattagtttggccaa |
40256817 |
T |
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