View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17743_low_7 (Length: 580)
Name: NF17743_low_7
Description: NF17743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17743_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 17 - 564
Target Start/End: Complemental strand, 43409053 - 43408504
Alignment:
| Q |
17 |
caatacatccatgtcaccaacataacaagctgaatcaaccgttgatatgcagcaactcatagttgaaacaccacaacctgatgcaccactacttcccttt |
116 |
Q |
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| T |
43409053 |
caatacatccatgtcaccaacataacaagctgaatcaaccgttgatatgcagcaactcatagttgaaacaccacaacctgatgcaccactacttcccttt |
43408954 |
T |
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| Q |
117 |
cctcctccttgttgttgttgtaggcaaggagcccatgttagtgctaatggtaaattgtgcgtcttgcacactgaagccaacacttccattatctcgttca |
216 |
Q |
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| T |
43408953 |
cctcctccttgttgttgttgtaggcaaggagcccatgttagtgctaatggtaaattgtgcgtcttgcacactgacgccaacacttccattatctcgttca |
43408854 |
T |
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| Q |
217 |
cggctgcttcatatagctcttcaaatacctaattattcattatcatatcatttttagaaacaattttatttagtttttgttgatttaatcaaatccagta |
316 |
Q |
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| T |
43408853 |
ccgctgcttcatatagctcttcaaatacctaattattcattatcatatcatttttagaaacaattttatatagtttttgttgatctaatcaaatccagta |
43408754 |
T |
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| Q |
317 |
ctatgatctga---tgattgtttgc---ttacctttactgcttgtgggatattcatgttgtgactacttctaaaatcaacagcctgcatcagcaaaagat |
410 |
Q |
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| T |
43408753 |
ctatgatctgatgatgattgtttgctaattacctttactgcttgtgggatattcatgttgtgactacttctaaaatcaacagcctgcatcagcaaaagat |
43408654 |
T |
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| Q |
411 |
ggatccatattcaatctcatgtatgtttctaacatttgttaatttaatttcaagaagaagtaacaaacatatatacctcaagagcattagagagatgatc |
510 |
Q |
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| T |
43408653 |
ggatccatattcaatctcatgtatgtttctaacatttgttaatttaatttcaagaagaagtaacaaac----atacctcaagagcattagagagatgatc |
43408558 |
T |
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| Q |
511 |
aagttgtggacggtaattgatgagggtttgattggagataacaaactcaataac |
564 |
Q |
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| T |
43408557 |
aagttgtggacggtaattgatgagggtttgattggagataacaaactcaataac |
43408504 |
T |
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