View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17744_high_10 (Length: 204)
Name: NF17744_high_10
Description: NF17744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17744_high_10 |
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| [»] scaffold0079 (1 HSPs) |
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| [»] scaffold0384 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 41075451 - 41075611
Alignment:
| Q |
18 |
catatatgaattctttattatcaatcactaaacctgcaggatgagttagtgttatgacgaaaggtgggataaatgttttcacgttggtaagctcccaggg |
117 |
Q |
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| T |
41075451 |
catatatgaattctttattatcaatcactaaacctgcaggatgagttattgttatgacgaaaggtgggataaatgttttcacgttggtaagctcccaggg |
41075550 |
T |
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| Q |
118 |
ggagattaaagacatgggaaaaagaatgaggactgagagtaagagaaagagaagcagtttt |
178 |
Q |
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| T |
41075551 |
gaagattaaagacatgggaaaaagaatgaggactgagagtaagagaaagagaagcattttt |
41075611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0079 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0079
Description:
Target: scaffold0079; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 178
Target Start/End: Complemental strand, 6220 - 6061
Alignment:
| Q |
18 |
catatatgaattctttattatcaatcactaaacctgcaggatgagttagtgttatgacgaaaggtgggataaatgttttcacgttggtaagctcccaggg |
117 |
Q |
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| T |
6220 |
catatatgaattctttatcatcaatctctaaacctgcagaaggatgcagagt-atgaagaaaggtgggagaaatgttttcacgttggtaagctcccaggg |
6122 |
T |
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| Q |
118 |
ggagattaaagacatgggaaaaagaatgaggactgagagtaagagaaagagaagcagtttt |
178 |
Q |
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| | | | |||||||||||||||||||||||||| |||| |||||| |||||||||||||| |
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| T |
6121 |
gaaaagtgaagacatgggaaaaagaatgaggactcagagcaagagatagagaagcagtttt |
6061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0384 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: scaffold0384
Description:
Target: scaffold0384; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 18 - 178
Target Start/End: Complemental strand, 3659 - 3502
Alignment:
| Q |
18 |
catatatgaattctttattatcaatcactaaacctgcaggatgagttagtgttatgacgaaaggtgggataaatgttttcacgttggtaagctcccaggg |
117 |
Q |
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|||||||||||||||||| ||||||| |||||||||||| | || || || || | ||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
3659 |
catatatgaattctttatcatcaatctctaaacctgcagaaggatgcagagt-ataaagaaaggtgggagaaatgttttcacgtgggtaagctcccaggg |
3561 |
T |
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| Q |
118 |
ggagattaaagacatgggaaaaagaatgaggactgagagtaagagaaagagaagcagtttt |
178 |
Q |
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| | | | |||||||||||||||||||||||||| || |||||| |||||||||||||| |
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| T |
3560 |
gaaaagtgaagacatgggaaaaagaatgaggact--cagcaagagatagagaagcagtttt |
3502 |
T |
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