View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17744_high_3 (Length: 337)
Name: NF17744_high_3
Description: NF17744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17744_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 41244123 - 41244433
Alignment:
| Q |
1 |
tatacaacaaaattatcatgtgtgtgtcctggtctcaaatgtgcctctcaattgagcaaagttcacgaatacaatgttttcatttcttggaaagctaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41244123 |
tatacaacaaaattatcatgtgtgtgtcctggtctcaaatgtgcctctcaattgagcaaagttcacgaatacaatgttttcatttcttggaaagctaaaa |
41244222 |
T |
|
| Q |
101 |
aattataattctaactacaaacaatatagtaatgtacaaacataaggcattagtttttaatagtgcttgtatacttttttcaattgtttgtaatgtataa |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41244223 |
aattataattctaactacaaacaatttagtaatgtacaaacataaggcattagtttttaatagtgcctgtatacttttttcaattgtttgtaatgtataa |
41244322 |
T |
|
| Q |
201 |
aatacaattttagcgaaaggcaaaatacgtctaacttaaagtttannnnnnnag-aaacctctaacttaaagatgaaatagggtttgtaggtggaatact |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41244323 |
aatacaattttagcgaaaggcaaaatacgtctaacttaaagtttatttttttagaaaacctctaacttaaagatgaaatagggtttgtaggtggaatact |
41244422 |
T |
|
| Q |
300 |
aaaattttgtc |
310 |
Q |
| |
|
||||||||||| |
|
|
| T |
41244423 |
aaaattttgtc |
41244433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University