View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17744_high_4 (Length: 333)
Name: NF17744_high_4
Description: NF17744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17744_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 329
Target Start/End: Complemental strand, 37662122 - 37661811
Alignment:
| Q |
18 |
aattcgatgtttgttactacctagaagccagaaggtctagaacaagaacatggaccattaaattcagcagataattttgagcgtgaatcacctagatagg |
117 |
Q |
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| T |
37662122 |
aattcgatgcttgttactatctagaagccagaaggtctagaacaagaacatggaccattaaattcagcagataattttgagtgtgaatcacctagatagg |
37662023 |
T |
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| Q |
118 |
gtaaatagtgaaaaacacaagtttctttgatttatggatcatatatgtgccagttatataattgtacttgttgtgcctttgttgaaagatggttcaagta |
217 |
Q |
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| T |
37662022 |
gtaaatagtgaaaaacacaagtttctttgatttatggatcatatatgtgccagttatataattgtacttgttgtgcctttgttgaaagatggttcaagta |
37661923 |
T |
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| Q |
218 |
ttggttcatttcatgcaatccaacaaggtgtaacagttgtgttctctgcagcaaactatgatgtttcacctgaaccatctttagttagaaatgttgaacc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
37661922 |
ttggttcatttcatgcaatccaacaaggtgtaacagttgtgttctctgcagcaaactatgaagtttcacctgaaccatctttagttagaaatgttgaacc |
37661823 |
T |
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| Q |
318 |
atggtccctctg |
329 |
Q |
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|||||||||||| |
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| T |
37661822 |
atggtccctctg |
37661811 |
T |
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