View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17744_low_14 (Length: 251)
Name: NF17744_low_14
Description: NF17744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17744_low_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 233
Target Start/End: Original strand, 41244447 - 41244672
Alignment:
| Q |
8 |
ggtggaatactaaaatccaatggcatatccattgattattatccagattataaaagctgcaatagttcaccttgcaagttagaaggatagtccagacgta |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
41244447 |
ggtggaatactaaaatccaatggcatatccattgattattatccagattataaaagctgcaatagttcaccttgcaagttagaaggatagtcccgacgta |
41244546 |
T |
|
| Q |
108 |
tgtgcatataaatataagcaagtaaatacgataattaaatgaagcaactaacattatcacaacctacaaacgtcaatataaataatcgcggaaaagtgga |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41244547 |
cgtgcatataaatataagcaagtaaatacgataattaaatgaagcaacaaacattatcacaacctacaaacgtcaatataaataatcgcggaaaagtgga |
41244646 |
T |
|
| Q |
208 |
aaatattttccattggtagtggatct |
233 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
41244647 |
aaatattttccattggtagtggatct |
41244672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 63 - 166
Target Start/End: Original strand, 41231740 - 41231843
Alignment:
| Q |
63 |
gctgcaatagttcaccttgcaagttagaaggatagtccagacgtatgtgcatataaatataagcaagtaaatacgataattaaatgaagcaactaacatt |
162 |
Q |
| |
|
||||||||| |||| || |||||||| ||||| | ||||| || | |||| | ||| ||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
41231740 |
gctgcaatatttcatctcgcaagttaaaaggaaggcccagatgtctctgcaaagaaacataagcaagtaaatatgataactaaatgaagcaactaacatt |
41231839 |
T |
|
| Q |
163 |
atca |
166 |
Q |
| |
|
|||| |
|
|
| T |
41231840 |
atca |
41231843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University