View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17744_low_15 (Length: 247)
Name: NF17744_low_15
Description: NF17744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17744_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 30287917 - 30288158
Alignment:
| Q |
1 |
tcattacagccacataattgtcgtttatgctttttgacttctagtggtttctactttcatgtaataatcagcacaattgtgtctagcttactgcattgtt |
100 |
Q |
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| T |
30287917 |
tcattacagccacataattgtcgtttatgctttttgacttctagtggtttcaactttcatgtaataatcagcacaattgtgtctagcttactgcattgtt |
30288016 |
T |
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| Q |
101 |
atgggtttagtggctatgtatagggttgtaatcttggcttttctaatcatccttt--ttacacatagaaactcttgaaatcttgttcttacaatttcaat |
198 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30288017 |
atgggtttagtggctatgtatagggttgtaatctaggcttttctaatcatcctttacttacacatagaaactcttgaaatcttgttcttacaatttcaat |
30288116 |
T |
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| Q |
199 |
aaaaactatgtttctttactccttttcttctttttacctttg |
240 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30288117 |
aaaaactatgtttctttactccttttcttctttttacttttg |
30288158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 106 - 208
Target Start/End: Original strand, 30293127 - 30293227
Alignment:
| Q |
106 |
tttagtggctatgtatagggttgtaatcttggcttttctaatcatcctttttacacatagaaactcttgaaatcttgttcttacaatttcaataaaaact |
205 |
Q |
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|||||||||||| |||||||||||||| | ||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||| || |
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| T |
30293127 |
tttagtggctattgttagggttgtaatctaagtttttctaatcatccttt--acacctagaaactcttgaaatcttgttcttaccatttcaataaaagct |
30293224 |
T |
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| Q |
206 |
atg |
208 |
Q |
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||| |
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| T |
30293225 |
atg |
30293227 |
T |
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