View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17744_low_3 (Length: 399)
Name: NF17744_low_3
Description: NF17744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17744_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 24 - 392
Target Start/End: Original strand, 49642606 - 49642974
Alignment:
| Q |
24 |
acatctccatcatcactatcttcctcctcctcttgaatccaaccaaatccgaagaaaataaaaaccttaaatcaacaacaacagaaaatgagtgcgaaca |
123 |
Q |
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| T |
49642606 |
acatctccatcatcactatcttcctcctcctcttgaatccaaccaaatccgaagaaaataaaaaccttaaatcaacaacaacagaaaatgagtgcgaaca |
49642705 |
T |
|
| Q |
124 |
acgttggatccacataagaaaattaccaccaaaattcaacctagatctactctcaaattgttcagaatacacattcctagacgatttatgtccttactta |
223 |
Q |
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| T |
49642706 |
acgttggatccacataagaaaattaccaccaaaattcaacctagatctactctcaaattgttcagaatacacattcctagacgatttatgtccttactta |
49642805 |
T |
|
| Q |
224 |
gcaaaccatggtttgggtcaaaaaacccataaccgttcccatagttggtaccgaaccgacccatccatgcttgaactcattttccatcgtcgtatgttag |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49642806 |
gcaaaccatggtttgggtcaaaaaacccataaccgttcccatagttggtaccgaaccgacccatccatgcttgaactcattttccatcgtcgtatgttag |
49642905 |
T |
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| Q |
324 |
aatatccatgcttaacggaagatcctaaaaccgctaacgccgtttatcttccttactacgctgcctttg |
392 |
Q |
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| T |
49642906 |
aatatccatgcttaacggaagatcctaaaaccgctaacgccgtttatcttccttactacgctgcctttg |
49642974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 348
Target Start/End: Complemental strand, 6623275 - 6623170
Alignment:
| Q |
245 |
aaaacccataaccgttcccatagttggtaccgaaccgacccatccatgcttgaactcattttccatcgtcgtatgtt-agaatat--ccatgcttaacgg |
341 |
Q |
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| T |
6623275 |
aaaacccataacagttcccatagttgacaca-aatcgacccatacatgcttgaactcatattcaatccccgtatgttaagaatatccccatgcttaacaa |
6623177 |
T |
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| Q |
342 |
aagatcc |
348 |
Q |
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||||||| |
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| T |
6623176 |
aagatcc |
6623170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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