View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17745_high_1 (Length: 397)

Name: NF17745_high_1
Description: NF17745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17745_high_1
NF17745_high_1
[»] chr8 (3 HSPs)
chr8 (4-166)||(27419794-27419956)
chr8 (158-383)||(27418887-27419116)
chr8 (4-316)||(42449873-42450190)
[»] chr5 (1 HSPs)
chr5 (14-296)||(18471393-18471678)
[»] chr4 (1 HSPs)
chr4 (14-232)||(29989554-29989778)
[»] chr3 (4 HSPs)
chr3 (4-150)||(33280332-33280480)
chr3 (14-232)||(32619173-32619393)
chr3 (247-303)||(33280559-33280615)
chr3 (155-231)||(54007848-54007924)
[»] chr2 (3 HSPs)
chr2 (77-227)||(18240233-18240385)
chr2 (61-232)||(4437103-4437271)
chr2 (64-112)||(18240386-18240434)


Alignment Details
Target: chr8 (Bit Score: 131; Significance: 7e-68; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 4 - 166
Target Start/End: Complemental strand, 27419956 - 27419794
Alignment:
Q  4 actcctataataattactcttagttccaataaacaacttacttttaatgttctcttgtaataaataaggacacaaataaaattaacttataacacatttg 103  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||| | |||||||||||||||| |||||    
T  27419956 actcctataataattactcttagttccaataagcaacttacttttagtattctcttgtaataaataaggacacaagtgaaattaacttataacatatttg 27419857  T
Q  104 aaagcttgtcgatgtttttgatgaaaagaacaaaaaatattgacactttagtttttataaaaa 166  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27419856 aaagtttgtcgatgtttttgatgaaaagaacaaaaaatattgacacttttgtttttataaaaa 27419794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 158 - 383
Target Start/End: Complemental strand, 27419116 - 27418887
Alignment:
Q  158 ttataaaaaatatcggaggaagtataattgcctatgtttattttactttcatcttaatgaaacgcaaataataagnnnnnnnnnnnngataaaatagtaa 257  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||| ||||| |||||||||||             ||||||||||||    
T  27419116 ttataaaaaatatcggaggaagtataattacatatgtttattttacttttatcttaaagaaacccaaataataagtttttattttttaataaaatagtaa 27419017  T
Q  258 ttttagtgttatagtgtatgagtattgcccccaccatctaaaacttttgactctgccactagttata----gggacgtatggagtaatatttacatgtca 353  Q
    ||||||||||||||||||||||||||||| | || |||||||  ||||||||| | |||| ||||||    |||| |||||||||||||||||| |||||    
T  27419016 ttttagtgttatagtgtatgagtattgcctctacaatctaaattttttgactcagtcactggttataattagggatgtatggagtaatatttacctgtca 27418917  T
Q  354 ctagacatgttgatatttatagagtttggt 383  Q
    || |||||||||||||||||||||||||||    
T  27418916 ctggacatgttgatatttatagagtttggt 27418887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 4 - 316
Target Start/End: Complemental strand, 42450190 - 42449873
Alignment:
Q  4 actcctataataattactcttagttccaataaacaacttacttttaatgttct--cttgtaat-aaataaggacacaaataaaattaacttataacacat 100  Q
    ||||||||| |||||||||||| || ||||||  |  ||||||||||||||||  || ||| | |||||||||||||||| ||||||| |||||||||||    
T  42450190 actcctatattaattactcttaatttcaataactattttacttttaatgttctttctcgtatttaaataaggacacaaatgaaattaaattataacacat 42450091  T
Q  101 ttgaaagcttgtcgatgtttttgatgaaaagaac-aaaaaatattgacactttagtt-tttataaaaaatatcggaggaagtataattgcctatgtttat 198  Q
    ||||||| ||||| || |||||||| |||||||| |||||||||||||||||| ||| ||||||||||| ||| || ||||||||||||   ||||||||    
T  42450090 ttgaaagtttgtcaatatttttgataaaaagaacgaaaaaatattgacacttttgttctttataaaaaagatctgaagaagtataattgtagatgtttat 42449991  T
Q  199 tttactttcatcttaatgaaacgcaaataataagnnnnnnnnnnnngataaaatagtaattttagtgttatagtgtatgagtattgcccccaccatctaa 298  Q
    ||||||||||||||||  |||| |||||| ||||            | |||||||||||||||| ||||| | ||||||| |||||| | ||| ||||||    
T  42449990 tttactttcatcttaaacaaactcaaatagtaagtttttttttgttggtaaaatagtaattttaatgttacaatgtatgaatattgctcacacaatctaa 42449891  T
Q  299 aacttttgactctgccac 316  Q
    ||||| || |||| ||||    
T  42449890 aacttatggctctaccac 42449873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 14 - 296
Target Start/End: Complemental strand, 18471678 - 18471393
Alignment:
Q  14 taattactcttagttccaataaacaacttacttttaatgtt--ctcttgtaataaataaggacacaaataaaattaacttataacacatttgaaagcttg 111  Q
    |||||||||||| || ||||||  |||||||||||||| ||  ||||||||||||||||||||||| || | ||||  |||||||||||||||||| |||    
T  18471678 taattactcttaatttcaataattaacttacttttaatattgtctcttgtaataaataaggacacatatgagattagtttataacacatttgaaagtttg 18471579  T
Q  112 tcgatgtttttgatgaaaagaacaaaaaatattgacactttag-tttttataaaaaatatcggaggaagtataattgcctatgtttattttactttcatc 210  Q
    || ||||||||| | |||||||| |||||||||| | |||| | ||||||||||||| |||||||||||||||||||   ||||||||||||||||||||    
T  18471578 tcaatgtttttggtaaaaagaaccaaaaatattggcgcttttgttttttataaaaaagatcggaggaagtataattgtaaatgtttattttactttcatc 18471479  T
Q  211 ttaatgaaacgcaaataataagnnnnnnnnnnnngataaaatagtaattttagtgttatagtgtatgagtattgcccccaccatct 296  Q
    |||| ||||| ||||| |||||            ||||||||| |||||||||||||||||||||| | |||||||||||| ||||    
T  18471478 ttaacgaaacccaaatcataagttttcattttttgataaaataataattttagtgttatagtgtataaatattgcccccacaatct 18471393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 29989778 - 29989554
Alignment:
Q  14 taattactcttagttccaataaacaacttacttttaatgttctctt---gtaataaataaggacacaaataaaattaacttataacacatttgaaagctt 110  Q
    |||||||||||| ||| |||||  |||||||||||||| ||||||    |||||||||||| |||||| | |||||| ||||||||||||||||||| ||    
T  29989778 taattactcttaattctaataactaacttacttttaatattctctcccagtaataaataagaacacaagtgaaattagcttataacacatttgaaagttt 29989679  T
Q  111 gtcgatgtttttgatgaaaagaacaaaaaatattgacactttagtttttat---aaaaaatatcggaggaagtataattgcctatgtttattttactttc 207  Q
    | | ||||| ||||| |||  || |||||||||||||||||| |||||| |   |||||| ||| ||| |||||||||||   |||||||||||||||||    
T  29989678 gacaatgttcttgataaaagaaaaaaaaaatattgacacttttgtttttttataaaaaaagatcagagaaagtataattgtagatgtttattttactttc 29989579  T
Q  208 atcttaatgaaacgcaaataataag 232  Q
    ||||||| ||||| |||||||||||    
T  29989578 atcttaaagaaacacaaataataag 29989554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 8e-34; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 4 - 150
Target Start/End: Original strand, 33280332 - 33280480
Alignment:
Q  4 actcctataataattactcttagttccaataaacaacttacttttaatgttctctt--gtaataaataaggacacaaataaaattaacttataacacatt 101  Q
    ||||||||| ||| |||||||| ||||||||| ||||||||||||||| ||||||   |||||||||||| |||||||| ||||||  ||||||||||||    
T  33280332 actcctatattaactactcttaattccaataaccaacttacttttaatattctctctcgtaataaataagaacacaaatgaaattagtttataacacatt 33280431  T
Q  102 tgaaagcttgtcgatgtttttgatgaaaagaacaaaaaatattgacact 150  Q
    |||||  |||||||||||||| || ||| |||| |||||||||||||||    
T  33280432 tgaaattttgtcgatgttttttataaaaggaaccaaaaatattgacact 33280480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 32619393 - 32619173
Alignment:
Q  14 taattactcttagttccaataaacaacttacttttaatgtt--ctcttgtaataaataaggacacaaataaaattaacttataacacatttgaaagcttg 111  Q
    ||||||||||||  ||||||||  ||||||||||| || ||  |||| ||||||||||| ||||| ||| | ||||  |||||||||||||||||| |||    
T  32619393 taattactcttaactccaataactaacttacttttgatattgtctctcgtaataaataaagacacgaatgagattagtttataacacatttgaaagtttg 32619294  T
Q  112 tcgatgtttttgatgaaaagaacaaaaaatattgacacttt-agtttttataaaaaatatcggaggaagtataattgcctatgtttattttactttcatc 210  Q
    |  || |||||| | |||| |||||||||||||| || ||| | ||||||||||||| ||||||| |||||||||||   ||||||||||||||| | ||    
T  32619293 ttaatatttttggtaaaaa-aacaaaaaatattggcatttttattttttataaaaaaaatcggagaaagtataattgtagatgtttattttacttccctc 32619195  T
Q  211 ttaatgaaacgcaaataataag 232  Q
    ||||  ||||  ||||||||||    
T  32619194 ttaaacaaacctaaataataag 32619173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 247 - 303
Target Start/End: Original strand, 33280559 - 33280615
Alignment:
Q  247 taaaatagtaattttagtgttatagtgtatgagtattgcccccaccatctaaaactt 303  Q
    |||||||||||||||||||| ||||| ||||| |||||||||||| |||||||||||    
T  33280559 taaaatagtaattttagtgtcatagtatatgaatattgcccccacaatctaaaactt 33280615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 155 - 231
Target Start/End: Original strand, 54007848 - 54007924
Alignment:
Q  155 tttttataaaaaatatcggaggaagtataattgcctatgtttattttactttcatcttaatgaaacgcaaataataa 231  Q
    ||||||||||||| ||| ||||||||||||||    |||||||||||| |||||| |||| ||||| ||||||||||    
T  54007848 tttttataaaaaagatcagaggaagtataattttagatgtttattttattttcattttaaagaaacacaaataataa 54007924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 77 - 227
Target Start/End: Complemental strand, 18240385 - 18240233
Alignment:
Q  77 aaataaaattaacttataacacatttgaaagcttgtcgatgtttttgatgaaaagaacaaaaaatattgacac-tttagtttttat-aaaaaatatcgga 174  Q
    |||| |||||| ||||||| ||||||||||| ||||| || |||||||| |||| ||| |||||||||||||| |||| ||||||| |||||| |||| |    
T  18240385 aaatgaaattagcttataatacatttgaaagtttgtcaatatttttgataaaaaaaaccaaaaatattgacacttttattttttataaaaaaagatcgaa 18240286  T
Q  175 ggaagtataattgcctatgtttattttactttcatcttaatgaaacgcaaata 227  Q
     ||||||||||||   ||||||||||||||||||||||||  |||| ||||||    
T  18240285 tgaagtataattgtagatgtttattttactttcatcttaaacaaacccaaata 18240233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 61 - 232
Target Start/End: Complemental strand, 4437271 - 4437103
Alignment:
Q  61 taataaataaggacacaaataaaattaacttataacacatttgaaagcttgtcgatgtttttgatgaaaagaacaaaaaatattgacacttta-gttttt 159  Q
    ||||||||||| |||||| | ||||||  |||||||||||||||||| ||||| || |||||         |||||||||||| ||||||||  ||||||    
T  4437271 taataaataagaacacaagtgaaattagtttataacacatttgaaagtttgtcaatattttt---------aacaaaaaatatagacactttttgttttt 4437181  T
Q  160 ----ataaaaaatatcggagg-aagtataattgcctatgtttattttactttcatcttaatgaaacgcaaataataag 232  Q
        |||||||| ||| |||| |||||||||||   |||||||||||||||||||||||| ||||| |||||||||||    
T  4437180 ttatataaaaaagatcagaggtaagtataattgaagatgtttattttactttcatcttaaagaaacacaaataataag 4437103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 18240434 - 18240386
Alignment:
Q  64 taaataaggacacaaataaaattaacttataacacatttgaaagcttgt 112  Q
    ||||||||||||||||| |||||| |||||||||||||| |||| ||||    
T  18240434 taaataaggacacaaatgaaattagcttataacacatttaaaagtttgt 18240386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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