View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17745_high_2 (Length: 393)
Name: NF17745_high_2
Description: NF17745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17745_high_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 19 - 388
Target Start/End: Complemental strand, 29006394 - 29006025
Alignment:
| Q |
19 |
atacttgtgccataacaacgtgtccaagcattttgtgagttgtttccattagtgtttaataagaaaagagacatgtcatttataatggcaaacatgattg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29006394 |
atacttgtgccataacaacgtgtccaagcattttgtgagttgtttccattagtgtttaataagaaaagagacatgtcatttataatggcaaacatgattg |
29006295 |
T |
|
| Q |
119 |
agtcttattcttaggtcatctacctagcacattcttcttaatgaatatttagacattattatcaccataaacaacaggtatgtagacaactggtgtcaat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29006294 |
agtcttattcttaggtcatctacctagcacattcttcttaatgaatatttagacattattatcaccataaacaacaggtatgtagacaactggtgtcaat |
29006195 |
T |
|
| Q |
219 |
taaagctccaacttgcttcttgaccccctgacccttgtctttggattcattatttattttttatgtcggggccactaggaatcagagttacatttgtttg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29006194 |
taaagctccaacttgcttcttgaccccctgacccttgtctttggattcattatttattttttatgtcggggccactaggaatcagagttacatttgtttg |
29006095 |
T |
|
| Q |
319 |
ctttatgtgacaacttctcattcttagtttgatatgagatgtatagtatgggtatttggaggtgcctatg |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29006094 |
ctttatgtgacaacttctcattcttagtttgatatgagatgtatagtatgggtatttggaggtgcctatg |
29006025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University