View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17745_high_3 (Length: 345)
Name: NF17745_high_3
Description: NF17745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17745_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 32910232 - 32909914
Alignment:
| Q |
1 |
agatagagaactccaaaaatatactccctccatctcaaatataacaaacaannnnnnnnnagattaattaaataattaatgtatctgatctacaatgtaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32910232 |
agatagagaactccaaaaatatactccctccatctcaaatataacaaacgatttttttt-aggttaattaaataattaatgtatctgatctacaatgtaa |
32910134 |
T |
|
| Q |
101 |
aacattttacatattcaatgaacctatagnnnnnnnntcnnnnnnnatattcgagacatgagagagtagtcatttggaataagtgagaatgaatacctcg |
200 |
Q |
| |
|
||||| ||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
32910133 |
aacat-------attcaatgaacctatagaaaaaaaatcttttcttatattcgagacatgagaaagtagtcatttggaataagtgagaatgaatacctcg |
32910041 |
T |
|
| Q |
201 |
taaccaacgagatgaggaaattaacatggttctctacctaaatgtgtaagctatatttaaggtcgtcactggaattttaagtattatataggttgtttgg |
300 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32910040 |
taaccaacgagatgagaaaattaacatggttctctacctaaatgtgtaagctatatttaagatcgtcactgaaattttaagtattatataggttgtttgg |
32909941 |
T |
|
| Q |
301 |
aaccactggattttccacccaacgcac |
327 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
32909940 |
aaccactggattttccacccaacgcac |
32909914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 63 - 94
Target Start/End: Original strand, 12396638 - 12396669
Alignment:
| Q |
63 |
attaattaaataattaatgtatctgatctaca |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
12396638 |
attaattaaataattaatgtatctgatctaca |
12396669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 34009555 - 34009514
Alignment:
| Q |
61 |
agattaattaaataattaatgtatctgatctacaatgtaaaa |
102 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
34009555 |
agatttattaaataattaatgtatctgatgtacattgtaaaa |
34009514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University