View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17745_high_6 (Length: 253)
Name: NF17745_high_6
Description: NF17745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17745_high_6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 253
Target Start/End: Original strand, 52542831 - 52543071
Alignment:
| Q |
13 |
aacctgtgcaccagttgcatcccctttaataaccgtcggggtcaagaacaccatcctaggattctccataccaccataaggaaaactaggtggcaaaacc |
112 |
Q |
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||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52542831 |
aacctgtgcaccagttgcatcccctttaataactgttggggtcaagaacaccatcctaggattctccataccaccataaggaaaactaggtggcaaaacc |
52542930 |
T |
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| Q |
113 |
aacaaatcaaatctctcccactcataatttccaaacaatctttccccttccctaatcatatcctcagttccatcaaactctttagcagctgaatccaaca |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52542931 |
aacaaatcaaatctctcccactcataatttccaaacaatctttccccttccctaatcatatcctcagttccatcaaactctttagcagctgaatccaaca |
52543030 |
T |
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| Q |
213 |
gttgagtcacagattcagcataaaccctagtcctgggcccc |
253 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| |
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| T |
52543031 |
gttgagtcacagcttcagcataaaccctagtcctgggcccc |
52543071 |
T |
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