View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17745_low_10 (Length: 202)
Name: NF17745_low_10
Description: NF17745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17745_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 54350394 - 54350225
Alignment:
| Q |
18 |
agagttattattattgtgaacaaattccattacatctctttgactgctagtaaattaacgagcaaataaaaatgcaaaattgaccagacaaatttcaatt |
117 |
Q |
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| T |
54350394 |
agagttattattattgtgaacaaattccattacatctctttgactgctagtaaattaacgaacaaataaaaatgcaaaattgaccagacaaatttcaatt |
54350295 |
T |
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| Q |
118 |
gttattcagtagtatatttgttttttaaaaatctcgtatacctacctcatttattacctaaatattatac |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54350294 |
gttattcagtagtatatttgttttttaaaaatctcgtatacctacctcatttattacctaaatattatac |
54350225 |
T |
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