View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17745_low_4 (Length: 345)
Name: NF17745_low_4
Description: NF17745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17745_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 10 - 246
Target Start/End: Complemental strand, 35475811 - 35475571
Alignment:
| Q |
10 |
gacatcatcacaaccattttgagttcaaatatgggaacgtgagggggacaaataaagcagcagtataataaatataagaatatatcatgaaaggaatttt |
109 |
Q |
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| T |
35475811 |
gacatcatcacaaccattgtgagttcaaatatgggaacgtgagggggacaaataaagcagtagtataataaatataagaatatatcatgaaaggaatttt |
35475712 |
T |
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| Q |
110 |
ttacatttttaggatgaggataataagtttc---nnnnnnnnnnnnnngagagggataataagttggtatcgtatt-nnnnnnnntgtattcagtattac |
205 |
Q |
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| T |
35475711 |
ttacatttttaggatgaggataataagtttcttttgttttttttttttgagagggataataagttggtatcgtattaaaaaaaaatgtattcagtattac |
35475612 |
T |
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| Q |
206 |
tattgccataaatatagagtaagtaagaagattattgactt |
246 |
Q |
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| T |
35475611 |
tattgccataaatatagagtaagtaagaagattattgactt |
35475571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 233 - 331
Target Start/End: Complemental strand, 35475084 - 35474991
Alignment:
| Q |
233 |
aagattattgacttgagagtggtatataatctaatctaatctaacctgtnnnnnnnnnnncattttgcatacaccacaaattcatctaacatgtgcatg |
331 |
Q |
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| T |
35475084 |
aagattattgacttgagagtggtatataatctaatctaa-----cctgtaaaaaaaaaaacattttgcatacaccacaaattcatctaacatgtgcatg |
35474991 |
T |
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