View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17745_low_5 (Length: 336)
Name: NF17745_low_5
Description: NF17745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17745_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 22 - 318
Target Start/End: Complemental strand, 14783234 - 14782941
Alignment:
| Q |
22 |
atctctcaccatgaaccctaccaacaaagaagacacaattgacattgaagccattgatcatcaagaagaagaaacacaacaacatcaaaatcaaccatca |
121 |
Q |
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| T |
14783234 |
atctctcaccacgaaccctaccaacaatgaagacacaattgacattgaagccattgatcatcaagaagaa---acacaacaacatcaaaatcaaccatca |
14783138 |
T |
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| Q |
122 |
ccatttgtcaacaacaaaaaccacctgcatgcaaatgatcaaaaatccattacaaacaaaaggtacatgccacttttgataatcaactttctcttactct |
221 |
Q |
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| T |
14783137 |
ccatttgtcaacaacaaaaaccacctgcatgcaaatgatcaaaaatccattacaaacaaaaggtacatgccacttttgataatcaactatctcttactct |
14783038 |
T |
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| Q |
222 |
ttgttggttcaacctcatcaagtttactctcaaaatactatttcatccacaaaggttcaagcaaatgggtctcaacttgggttcaatgtgctggctt |
318 |
Q |
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| T |
14783037 |
ttgttggttcaatctcatcaagtttactctcaaaatactatttcatccacaaaggttcaagcaaatgggtctcaacttgggttcaatgtgctggctt |
14782941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 158 - 308
Target Start/End: Complemental strand, 14775227 - 14775077
Alignment:
| Q |
158 |
gatcaaaaatccattacaaacaaaaggtacatgccacttttgataatcaactttctcttactctttgttggttcaacctcatcaagtttactctcaaaat |
257 |
Q |
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|||||||| |||| || |||||||||||||| || |||||| | || |||| || || |||||||| || ||| || ||||||||||||||||| | |
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| T |
14775227 |
gatcaaaagtccaccactaacaaaaggtacataccccttttggttattaactaccttttgctctttgtagggtcactttcttcaagtttactctcaaagt |
14775128 |
T |
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| Q |
258 |
actatttcatccacaaaggttcaagcaaatgggtctcaacttgggttcaat |
308 |
Q |
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| T |
14775127 |
actattttatccataaaggttctagtagatgggtttcaacttgggttcaat |
14775077 |
T |
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