View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17745_low_7 (Length: 286)
Name: NF17745_low_7
Description: NF17745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17745_low_7 |
 | |
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| [»] scaffold0002 (1 HSPs) |
| | |
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| [»] scaffold1079 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 16898948 - 16899230
Alignment:
| Q |
1 |
tttcccatttttataggaacttctgtaccataaacaatggtatctccaattatagcccctctggggtgtaaaatatatcttttctcaccatccccatagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16898948 |
tttcccatttttataggaacttctgtaccataaacaatggtatctccaattatagcccctctggggtgtaaaatatatcttttctcaccatccccatagt |
16899047 |
T |
|
| Q |
101 |
gtatgagacaaatgtgtgcatttctattagggtcgtattcgatagttacgattcgaccatatatgtctttttcattacgtcgaaaatcaattttacggta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16899048 |
gtatgagacaaatgtgtgcatttctattagggtcgtattcgatagttacgattcgaccatatatgtctttttcattacgtcgaaaatcaattttacggta |
16899147 |
T |
|
| Q |
201 |
tagacgcttatgacctccccctctatgccctgcggtaatgattcctctggcattacggcctttaccacaatgatgatgtccat |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
16899148 |
tagacgcttatgacctccccctctatgccctgcggtaatgattcctctggcattacggcctttaccacaatgatgctgtccat |
16899230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 18347463 - 18347745
Alignment:
| Q |
1 |
tttcccatttttataggaacttctgtaccataaacaatggtatctccaattatagcccctctggggtgtaaaatatatcttttctcaccatccccatagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18347463 |
tttcccatttttataggaacttctgtaccataaacaatggtatctccaattatagcccctctggggtgtaaaatatatcttttctcaccatccccatagt |
18347562 |
T |
|
| Q |
101 |
gtatgagacaaatgtgtgcatttctattagggtcgtattcgatagttacgattcgaccatatatgtctttttcattacgtcgaaaatcaattttacggta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18347563 |
gtatgagacaaatgtgtgcatttctattagggtcgtattcgatagttacgattcgaccatatatgtctttttcattacgtcgaaaatcaattttacggta |
18347662 |
T |
|
| Q |
201 |
tagacgcttatgacctccccctctatgccctgcggtaatgattcctctggcattacggcctttaccacaatgatgatgtccat |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
18347663 |
tagacgcttatgacctccccctctatgccctgcggtaatgattcctctggcattacggcctttaccacaatgatgctgtccat |
18347745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 107 - 233
Target Start/End: Original strand, 51701101 - 51701232
Alignment:
| Q |
107 |
gacaaatgtgtgcatttctattagggtcgtat----tcgatagttacgattcgaccatatatgtctttttcattacgtcgaaaatcaattttacggtata |
202 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||| |||||||| || |||||||||||||| ||||||| |||||||||||||||| ||||| |
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|
| T |
51701101 |
gacaaatgtgtgcatttcaattagggtcgtatatattcgttagttacgttttgaccatatatgtctatttcattcttacgaaaatcaattttacagtata |
51701200 |
T |
|
| Q |
203 |
gacgcttatgacct-ccccctctatgccctgc |
233 |
Q |
| |
|
||| ||||||| || ||||||||||||||||| |
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|
| T |
51701201 |
gacacttatgatctcccccctctatgccctgc |
51701232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 51701385 - 51701430
Alignment:
| Q |
227 |
gccctgcggtaatgattcctctggcattacggcctttaccacaatg |
272 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||| |
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|
| T |
51701385 |
gccctgcggtaaagattcctctggcattacggcctttaacacaatg |
51701430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 13237028 - 13236746
Alignment:
| Q |
1 |
tttcccatttttataggaacttctgtaccataaacaatggtatctccaattatagcccctctggggtgtaaaatatatcttttctcaccatccccatagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13237028 |
tttcccatttttataggaacttctgtaccataaacaatggtatctccaattatagcccctctggggtgtaaaatatatcttttctcaccatccccatagt |
13236929 |
T |
|
| Q |
101 |
gtatgagacaaatgtgtgcatttctattagggtcgtattcgatagttacgattcgaccatatatgtctttttcattacgtcgaaaatcaattttacggta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13236928 |
gtatgagacaaatgtgtgcatttctattagggtcgtattcgatagttacgattcgaccatatatgtctttttcattacgtcgaaaatcaattttacggta |
13236829 |
T |
|
| Q |
201 |
tagacgcttatgacctccccctctatgccctgcggtaatgattcctctggcattacggcctttaccacaatgatgatgtccat |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
13236828 |
tagacgcttatgacctccccctctatgccctgcggtaatgattcctctggcattacggcctttaccacaatgatgctgtccat |
13236746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 198546 - 198277
Alignment:
| Q |
1 |
tttcccatttttataggaacttctgtaccataaacaatggtatctccaattatagcccctctggggtgtaaaatatatcttttctcaccatccccatagt |
100 |
Q |
| |
|
||||||||| ||||||||||| ||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
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|
| T |
198546 |
tttcccattgatataggaacttttgtaccagaaacaatagtatctccaattatagcccctctgggatgtaaaatatatctcttctcaccatccccatagt |
198447 |
T |
|
| Q |
101 |
gtatgagacaaatgtgtgcatttctattagggtcgtattcgatagttacgattcgaccatatatgtctttttcattacgtcgaaaatcaattttacggta |
200 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||| || |||||||||| |||| |||||||||||| ||| ||||||||||| ||||||||||| |
|
|
| T |
198446 |
gtatgagacaaatgtatgcatttcgattagggtcgtattctatggttacgattctaccagatatgtctttttgattccgtcgaaaatctattttacggta |
198347 |
T |
|
| Q |
201 |
tagacgcttatgacctccccctctatgccctgcggtaatgattcctctggcattacggcctttaccacaa |
270 |
Q |
| |
|
||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
198346 |
taggcgcttatgacctccccctctatgccatgcggtaatgattcctctggaattacgacctttaccacaa |
198277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 33420428 - 33420594
Alignment:
| Q |
1 |
tttcccatttttataggaacttctgtaccataaacaatggtatctccaattatagcccctctggggtgtaaaatatatcttttctcaccatccccatagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33420428 |
tttcccatttttataggaacttctgtaccataaacaatggtatctccaattatagcccctctggggtgtaaaatatatcttttctcaccatccccatagt |
33420527 |
T |
|
| Q |
101 |
gtatgagacaaatgtgtgcatttctattagggtcgtattcgatagttacgattcgaccatatatgtc |
167 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33420528 |
gtatgagataaatgtgtgcatttctattagggtcgtattcgatagttacgattcgaccatatatgtc |
33420594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1079 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: scaffold1079
Description:
Target: scaffold1079; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 82 - 283
Target Start/End: Original strand, 1 - 202
Alignment:
| Q |
82 |
ttctcaccatccccatagtgtatgagacaaatgtgtgcatttctattagggtcgtattcgatagttacgattcgaccatatatgtctttttcattacgtc |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| || |||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
1 |
ttctcaccatccccatagtgtatgagacaaatgtatgcatttcgattagggtcgtattctatggttacgattctaccatatatgtctttttcatttcgtc |
100 |
T |
|
| Q |
182 |
gaaaatcaattttacggtatagacgcttatgacctccccctctatgccctgcggtaatgattcctctggcattacggcctttaccacaatgatgatgtcc |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||| ||||| |
|
|
| T |
101 |
gaaaatcaattttacggtatagacgcttatgacctccccctctatgccttgcggtaatgattcctctggcattacgacctttaccacaacgatgctgtcc |
200 |
T |
|
| Q |
282 |
at |
283 |
Q |
| |
|
|| |
|
|
| T |
201 |
at |
202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 150 - 283
Target Start/End: Complemental strand, 23053585 - 23053452
Alignment:
| Q |
150 |
gattcgaccatatatgtctttttcattacgtcgaaaatcaattttacggtatagacgcttatgacctccccctctatgccctgcggtaatgattcctctg |
249 |
Q |
| |
|
|||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||| |
|
|
| T |
23053585 |
gattcgactatatatgtctttttcattccgtagaaaatcaattttacggtatagacgcttatgacctctccctctatgccctgtggtaacgattcctctg |
23053486 |
T |
|
| Q |
250 |
gcattacggcctttaccacaatgatgatgtccat |
283 |
Q |
| |
|
||||||| |||||||||||| ||||| ||||||| |
|
|
| T |
23053485 |
gcattacagcctttaccacagtgatgctgtccat |
23053452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 33064688 - 33064637
Alignment:
| Q |
9 |
ttttataggaacttctgtaccataaacaatggtatctccaattatagcccct |
60 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33064688 |
ttttataggaacttttgtaccataaacaatggtatctccaattatagcccct |
33064637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 186
Target Start/End: Complemental strand, 26345889 - 26345819
Alignment:
| Q |
116 |
gtgcatttctattagggtcgtattcgatagttacgattcgaccatatatgtctttttcattacgtcgaaaa |
186 |
Q |
| |
|
||||||||| |||||||| || ||| |||||||||||| | ||||||||||||||| ||| ||||||||| |
|
|
| T |
26345889 |
gtgcatttcgattagggttgttttcactagttacgattcaatcatatatgtcttttttattccgtcgaaaa |
26345819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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