View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17746_high_4 (Length: 250)
Name: NF17746_high_4
Description: NF17746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17746_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 1840266 - 1840511
Alignment:
| Q |
1 |
acagggtgcttagcaagcgttattggtcatgaaagattgattaataatggaacatgttcgggtatagggtgttgccaagttgatattcctcctagaatga |
100 |
Q |
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| T |
1840266 |
acagggtgcttaacaagcgttattggtcatgaaagattgattaataatggaacatgttcgggtatagggtgttgccaagttgatattcctcctagaatga |
1840365 |
T |
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| Q |
101 |
gatatataagtatacaagctactaatttcaacaaaaactcatccgatttttgtagctatgcatttgttgctaagaatggtagctatagtttttcatccac |
200 |
Q |
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| T |
1840366 |
gatatataagtatacaagctactaatttcaacaaaaactcatccgatttttgtagctatgcatttgttgctaagaatggtagctatagtttttcatccac |
1840465 |
T |
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| Q |
201 |
tcatttatcacaaggtttacctttcaaccgatcacctatgcttctt |
246 |
Q |
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| T |
1840466 |
tcatttatcacaaggtttacctttcaaccgatcacctgtggttctt |
1840511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 47 - 223
Target Start/End: Complemental strand, 1832697 - 1832524
Alignment:
| Q |
47 |
atggaacatgttcgggtatagggtgttgccaagttgatattcctcctagaatgagatatataagtatacaagctactaatttcaacaaaaactcatccga |
146 |
Q |
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| T |
1832697 |
atggaaaatgttcgggtgtagggtgttgccaaattgatattcatcctaaaatgaggaatgtaagcatacaagcttctaatttcaacact---tcatccaa |
1832601 |
T |
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| Q |
147 |
tttttgtagctatgcatttgttgctaagaatggtagctatagtttttcatccactcatttatcacaaggtttacctt |
223 |
Q |
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| T |
1832600 |
attttgtagctattcatttgttgttaggaatggtagctatgatttttcatccactcatttatcacaaggtttacctt |
1832524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 33 - 211
Target Start/End: Original strand, 1866231 - 1866409
Alignment:
| Q |
33 |
aagattgattaataatggaacatgttcgggtatagggtgttgccaagttgatattcctcctagaatgagatatataagtatacaagctactaatttcaac |
132 |
Q |
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| T |
1866231 |
aagattgattgataatgaaacatgttcgggtatagggtgctgccaagttgatattcctcctaaaatgtggaatataagcatagaagcttataatttcaac |
1866330 |
T |
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| Q |
133 |
aaaaactcatccgatttttgtagctatgcatttgttgctaagaatggtagctatagtttttcatccactcatttatcac |
211 |
Q |
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| T |
1866331 |
caaaattcatcactatattgtagctatgcatttgttgtcaagaatggtagctatactttttctaccaatcatttatcac |
1866409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 120
Target Start/End: Complemental strand, 9164155 - 9164081
Alignment:
| Q |
46 |
aatggaacatgttcgggtatagggtgttgccaagttgatattcctcctagaatgagatatataagtatacaagct |
120 |
Q |
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| T |
9164155 |
aatggaacatgttcgggtattggttgttgtcaagttgatattccacctatgatgaggaatataagtgtacaagct |
9164081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 120
Target Start/End: Complemental strand, 9158037 - 9157966
Alignment:
| Q |
49 |
ggaacatgttcgggtatagggtgttgccaagttgatattcctcctagaatgagatatataagtatacaagct |
120 |
Q |
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| T |
9158037 |
ggaacatgttcgggtattggttgttgtcaagttgatattccacctatgatgaggaatataagtatagaagct |
9157966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 9175990 - 9175916
Alignment:
| Q |
53 |
catgttcgggtatagggtgttgccaagttgatattcctcctagaatgagatatataagtatacaagctactaatt |
127 |
Q |
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| T |
9175990 |
catgttcgggtattggttgttgtcaagttgatattccacctatgatgaggaatataactatacaagcttctaatt |
9175916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 9203019 - 9202945
Alignment:
| Q |
53 |
catgttcgggtatagggtgttgccaagttgatattcctcctagaatgagatatataagtatacaagctactaatt |
127 |
Q |
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| T |
9203019 |
catgttcgggtattggttgttgtcaagttgatattccacctatgatgaggaatataactatacaatcttctaatt |
9202945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 118
Target Start/End: Complemental strand, 9220487 - 9220418
Alignment:
| Q |
49 |
ggaacatgttcgggtatagggtgttgccaagttgatattcctcctagaatgagatatataagtatacaag |
118 |
Q |
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| T |
9220487 |
ggaacatgttcgggtattggttgttgtcaagttgatattccacatatgatgaggaatataagtgtacaag |
9220418 |
T |
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