View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17746_high_9 (Length: 206)
Name: NF17746_high_9
Description: NF17746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17746_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 42301601 - 42301786
Alignment:
| Q |
1 |
atctggtgggtagataattctcactcgcatgcatgtgaagagtttagttgattctcctcgcatgcatgaatataaggatatttttcaagataatttaata |
100 |
Q |
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| T |
42301601 |
atcttgtgtgtagacaattttcactcgcatgcatgtgaagagtttagttgattctccttgcatgcatgaatataaggatatttttcaagataatttaata |
42301700 |
T |
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| Q |
101 |
agtttgacatgtgttattaaattcatatgtaatgtaacaaaaaatattggattctttatnnnnnnntaaactttaatcacctgttcg |
187 |
Q |
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| T |
42301701 |
agtttgacatgtgttattaaattcatatgtaatgtaacagaaaatattggattctttat-aaaaaataaactttaatcacctgttcg |
42301786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 67 - 153
Target Start/End: Complemental strand, 42302134 - 42302047
Alignment:
| Q |
67 |
tgaatataaggatatttttcaagataatttaataagtttgacatgtgttattaaattcatatgtaatgtaacaaaa-aatattggatt |
153 |
Q |
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| T |
42302134 |
tgaatataaggatatttttcaacatattttaatgagtccgacatgtgttattaaactcacaagtgatgtaacaaaagaatattggatt |
42302047 |
T |
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