View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17746_low_1 (Length: 558)
Name: NF17746_low_1
Description: NF17746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17746_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 539; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 1 - 551
Target Start/End: Original strand, 39982135 - 39982685
Alignment:
| Q |
1 |
tttgatcatggaagaactagacccggatgacacaggatatatcttggtaattaaatgacagtatctaaactgtagtctccagattaaaataactatttca |
100 |
Q |
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| T |
39982135 |
tttgatcatggaagaactagacccggatgacacaggatatatcttggtaattaaatgacagtatctaaattgtagtctccagattaaaataactatttca |
39982234 |
T |
|
| Q |
101 |
atattatagaattgtgaccttactcatttgaccatattttaacagataggcaatctcgagactctcttattacatggaccagaagagactacaaggggag |
200 |
Q |
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| T |
39982235 |
atattatagaattgtgaccttactcatttgaccatattttaacagataggcaatctcgagactctcttattacatggaccagaagagactacaaggggag |
39982334 |
T |
|
| Q |
201 |
aaagtaagtacctgagccaaatgctaagccaaaagcttaggcctacatttgagggaaatcctattaagaggtggtatagagataccaagtacttcttcca |
300 |
Q |
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| T |
39982335 |
aaagtaagtacctgagccaaatgctaagccaaaagcttaggcctacatttgagggaaatcctattaagaggtggtatagagataccaagtacttcttcca |
39982434 |
T |
|
| Q |
301 |
ggataactggcgaagatcctgggtatttgctctgtggatttgtgtcatgttaggcctatttgcctttaaatttgtgcaatataggagaagatctgcatat |
400 |
Q |
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| T |
39982435 |
ggataactggcgaagatcctgggtatttgctctgtggattggtgtcatgttaggcctatttgcctttaaatttgtgcaatataggagaagatctgcatat |
39982534 |
T |
|
| Q |
401 |
aaagtgatggggcactgtgtgtgcatggcaaaaggggctgctgaaagacttaaattgaacatggccattatcttattgcctgtttgccgaaacaccatca |
500 |
Q |
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| T |
39982535 |
aaagtgatggggcactgtgtgtgcatggcaaaaggggctgctgaaacacttaaattgaacatggccattatcttattgcctgtttgccgaaacaccatca |
39982634 |
T |
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| Q |
501 |
cttggctcaggaataagaccaagctaggcgcttttgttccttttgatgatg |
551 |
Q |
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| T |
39982635 |
cttggctcaggaataagaccaagctaggcgcttttgttccttttgatgatg |
39982685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 197 - 550
Target Start/End: Original strand, 44914329 - 44914682
Alignment:
| Q |
197 |
ggagaaagtaagtacctgagccaaatgctaagccaaaagcttaggcctacatttgagggaaatcctattaagaggtggtatagagataccaagtacttct |
296 |
Q |
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||||| ||||||||||||||||||||||||||| |||||||| | ||||| ||| |||||| || || | ||||||||||| ||| ||||| |
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| T |
44914329 |
ggagatagtaagtacctgagccaaatgctaagcataaagcttaagggtacatatgaatacaatcctgttcggaagaggtatagagatgccatttactttc |
44914428 |
T |
|
| Q |
297 |
tccaggataactggcgaagatcctgggtatttgctctgtggatttgtgtcatgttaggcctatttgcctttaaatttgtgcaatataggagaagatctgc |
396 |
Q |
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| T |
44914429 |
tgcaggacaattggcaaagaacttggatattggtactatggattggtgttatgtgtggtctatttgcctacaaattcatgcagtacagaagaaaagatgc |
44914528 |
T |
|
| Q |
397 |
atataaagtgatggggcactgtgtgtgcatggcaaaaggggctgctgaaagacttaaattgaacatggccattatcttattgcctgtttgccgaaacacc |
496 |
Q |
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||| |||| ||||| || |||||||||||||| ||||| || ||||| | ||| |||||||||||||| |||||||| || |||||||| ||||||||| |
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| T |
44914529 |
ttatgaagtaatgggtcattgtgtgtgcatggctaaaggtgcagctgagacactcaaattgaacatggctattatcttgttacctgtttgtcgaaacacc |
44914628 |
T |
|
| Q |
497 |
atcacttggctcaggaataagaccaagctaggcgcttttgttccttttgatgat |
550 |
Q |
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||||| ||||| ||||| |||||||| |||||| | |||||||||||||||| |
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| T |
44914629 |
atcacatggcttaggaacaagaccaaactaggcattgctgttccttttgatgat |
44914682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 333 - 549
Target Start/End: Original strand, 44898551 - 44898767
Alignment:
| Q |
333 |
tgtggatttgtgtcatgttaggcctatttgcctttaaatttgtgcaatataggagaagatctgcatataaagtgatggggcactgtgtgtgcatggcaaa |
432 |
Q |
| |
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|||||||| |||| |||| || |||||||||| ||||| |||| ||||| |||| | |||||||| |||||||||| || ||||| || ||||| || |
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| T |
44898551 |
tgtggattggtgttatgtgtggtctatttgcctacaaattcatgcagtatagaagaaaagctgcatatgaagtgatgggccattgtgtctgtatggctaa |
44898650 |
T |
|
| Q |
433 |
aggggctgctgaaagacttaaattgaacatggccattatcttattgcctgtttgccgaaacaccatcacttggctcaggaataagaccaagctaggcgct |
532 |
Q |
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||| || ||||| | ||| |||||||| ||||||||||||||||| |||||||||||||||||| | || ||||| ||| | ||||||||||||||| | |
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| T |
44898651 |
aggtgcagctgagacactcaaattgaatatggccattatcttattacctgtttgccgaaacaccgtaacctggcttagggacaagaccaagctaggcatt |
44898750 |
T |
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| Q |
533 |
tttgttccttttgatga |
549 |
Q |
| |
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| T |
44898751 |
gctgttccttttgatga |
44898767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 333 - 549
Target Start/End: Original strand, 44885223 - 44885439
Alignment:
| Q |
333 |
tgtggatttgtgtcatgttaggcctatttgcctttaaatttgtgcaatataggagaagatctgcatataaagtgatggggcactgtgtgtgcatggcaaa |
432 |
Q |
| |
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|||||||| | || |||||||| |||||||||| ||||||||||| ||| | |||| | |||| ||| | |||||||| || ||||| |||||||| || |
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| T |
44885223 |
tgtggattggagttatgttaggtctatttgcctacaaatttgtgcagtatcgaagaaaagctgcttatgaggtgatgggccattgtgtttgcatggctaa |
44885322 |
T |
|
| Q |
433 |
aggggctgctgaaagacttaaattgaacatggccattatcttattgcctgtttgccgaaacaccatcacttggctcaggaataagaccaagctaggcgct |
532 |
Q |
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||| || ||||| | ||| |||||||||||||| ||||||| || ||||||||||||||||| | || |||||||||| ||||||||||||||| | |
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| T |
44885323 |
aggtgcagctgagacactcaaattgaacatggctcttatcttgttacctgtttgccgaaacactgttacatggctcaggagcaagaccaagctaggcatt |
44885422 |
T |
|
| Q |
533 |
tttgttccttttgatga |
549 |
Q |
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| T |
44885423 |
gttgttccttttaatga |
44885439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 44913756 - 44913808
Alignment:
| Q |
1 |
tttgatcatggaagaactagacccggatgacacaggatatatcttggtaatta |
53 |
Q |
| |
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|||||||||||||||||||||||| ||||| || |||| |||| ||||||||| |
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| T |
44913756 |
tttgatcatggaagaactagaccctgatgatactggatttatcatggtaatta |
44913808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 550
Target Start/End: Complemental strand, 46562214 - 46562141
Alignment:
| Q |
477 |
tgcctgtttgccgaaacaccatcacttggctcaggaataagaccaagctaggcgcttttgttccttttgatgat |
550 |
Q |
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|||||||||| |||||||||||||||||||||| | |||||||| |||| | | ||||||| ||||||||| |
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| T |
46562214 |
tgcctgtttgtagaaacaccatcacttggctcagaagcaagaccaaattaggagttgttgttccctttgatgat |
46562141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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