View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17746_low_4 (Length: 418)
Name: NF17746_low_4
Description: NF17746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17746_low_4 |
 | |
|
| [»] chr6 (3 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 26563465 - 26563061
Alignment:
| Q |
1 |
cagcacttgtgtcacagccaaatcctgtataaccacatatcaaagtacttatatattatgagaataaaagtttcttagagttagtagtgttattgaaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26563465 |
cagcacttgtgtcacagccaaatcctgtataaccacatatcaaagtacttatatattatgagaataaaagtttcttagagttagtagtgttattgaaaaa |
26563366 |
T |
|
| Q |
101 |
agtttgttaatttgttaatgcattataaatagagcatcatgcatttatcaaattttgttgggactttcgggggagcaacattaggcatgatcgtcacatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26563365 |
agtttgttaatttgttaatgcattataaataga-------------atcaaattttgttgggactttagggggagcaacattaggcatgatcgtcacatt |
26563279 |
T |
|
| Q |
201 |
ggacaaaaagcaatcacatcttcacccaacatgataaaatattaggtatatgagtcttcacccttatccgttgcttacaaactacacatatattcaatgt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
26563278 |
ggacaaaaagcaatcacatcttcacccaacatgataaaatattaggtatatgagtcttctcacttatccgttgcttagaaactacacttatattcaatgt |
26563179 |
T |
|
| Q |
301 |
gagacttttaactcatacctgacacatcaacttacattacctgagtggcctaacattaaggaccaaatagcaaatggtagcggatcttgaatagggtcta |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26563178 |
gagacttttaactcatacctgacacatcaacttacattacctgagtggcctaacaataaggaccaaatagcaaatggtagcggatcttgaatagggtcta |
26563079 |
T |
|
| Q |
401 |
atgtcatattaaaatttg |
418 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
26563078 |
atgccatattaaaatttg |
26563061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 219
Target Start/End: Complemental strand, 26558051 - 26557896
Alignment:
| Q |
64 |
ataaaagtttcttagagttagtagtgttattgaaaaaagtttgttaatttgttaatgcattataaatagagcatcatgcatttatcaaattttgttggga |
163 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||| ||| | ||||| | | |||||||| |||| ||||| ||| || |||||||||| |
|
|
| T |
26558051 |
ataaaagtttgttagagttagtagtgttattaaaaaaagtatgtgagtttgtcagtacattataa-tagaatgtcatgtatta--cattctttgttggga |
26557955 |
T |
|
| Q |
164 |
ctttcgggggagcaacattaggcatgat---cgtcacattggacaaaaagcaatcacat |
219 |
Q |
| |
|
||||||| ||||||||||| |||||||| |||||| ||||| ||| ||||||||||| |
|
|
| T |
26557954 |
ctttcggaggagcaacattgggcatgatcgtcgtcactttggataaagagcaatcacat |
26557896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 26558122 - 26558078
Alignment:
| Q |
4 |
cacttgtgtcacagccaaatcctgtataaccacatatcaaagtac |
48 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||||| ||| |
|
|
| T |
26558122 |
cacttgtgtcacagccaaatcctgcataaccacaaatcaaactac |
26558078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 50936695 - 50936743
Alignment:
| Q |
76 |
tagagttagtagtgttattgaaaaaagtttgttaatttgttaatgcatt |
124 |
Q |
| |
|
||||||||||||||| |||||||| |||||||| |||||||| ||||| |
|
|
| T |
50936695 |
tagagttagtagtgtcgttgaaaaatgtttgttagtttgttaaagcatt |
50936743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University