View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17746_low_9 (Length: 248)
Name: NF17746_low_9
Description: NF17746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17746_low_9 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 5 - 248
Target Start/End: Complemental strand, 31560409 - 31560160
Alignment:
| Q |
5 |
ctgagatgaatgagaagtaacttacttaaacccttgcaagtaaatagtatctaaagcattttcttcaaaa-------gcaatatagggattgttatgtag |
97 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31560409 |
ctgaaatgaatgagaagtaacttacttaaacccttgcaagtaaatagtatctaaagcattttcttcaaaactcaaaagcaatatagggattgttatgtag |
31560310 |
T |
|
| Q |
98 |
atagtgctagtnnnnnnnntgttaagttaagctagaagatcaccaagaattctgatataaatgtagccaagttctactttggatcatcgtggaccaacgc |
197 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
31560309 |
atagtgctagtaaaaaaa-tgttaagttaagctagaagatcaccaagaattctgatataaatgtagccaagttctactttggatcatcatggaccaacgc |
31560211 |
T |
|
| Q |
198 |
ttaaaaactgcacaaaacatacgttgccagcgatagtaacctgatccttgt |
248 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
31560210 |
ttaaaaactgcacaaaacttacgcagccagcgatagtaacctgatccttgt |
31560160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 5 - 248
Target Start/End: Complemental strand, 31557573 - 31557324
Alignment:
| Q |
5 |
ctgagatgaatgagaagtaacttacttaaacccttgcaagtaaatagtatctaaagcattttcttcaaaa-------gcaatatagggattgttatgtag |
97 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
31557573 |
ctgaaatgaatgagaagtaacttacttaaacccttgcaagtaaatagtatctaaaacattttcttcaaaactcaaaagcaacatagggattgttatgtag |
31557474 |
T |
|
| Q |
98 |
atagtgctagtnnnnnnnntgttaagttaagctagaagatcaccaagaattctgatataaatgtagccaagttctactttggatcatcgtggaccaacgc |
197 |
Q |
| |
|
| || |||| | |||||||||||||| ||||||||||||||||||||||| |||| || |||||||| |||||||||| ||||||||||| | |
|
|
| T |
31557473 |
acagcgctactaaaaaat-tgttaagttaagcttgaagatcaccaagaattctgatacaaatataagcaagttcttctttggatcaccgtggaccaacac |
31557375 |
T |
|
| Q |
198 |
ttaaaaactgcacaaaacatacgttgccagcgatagtaacctgatccttgt |
248 |
Q |
| |
|
|||||||||||||||||| |||| || ||||| | ||| ||||||||||| |
|
|
| T |
31557374 |
ttaaaaactgcacaaaacttacgcagctagcgacattaatctgatccttgt |
31557324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 31876470 - 31876523
Alignment:
| Q |
22 |
taacttacttaaacccttgcaagtaaatagtatctaaagcattttcttcaaaag |
75 |
Q |
| |
|
|||||| |||||||||||||||||||||| | |||||||| |||||||||||| |
|
|
| T |
31876470 |
taacttccttaaacccttgcaagtaaatatcacctaaagcactttcttcaaaag |
31876523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University