View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17747_high_1 (Length: 439)
Name: NF17747_high_1
Description: NF17747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17747_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 42686773 - 42687196
Alignment:
| Q |
1 |
aatgtatagaacgttcttgcatgcaatctttactatttctttcttttcgatgaagttacttctatgtagtttactcgcataattttatacatatatgaat |
100 |
Q |
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| T |
42686773 |
aatgtatagaacgttcttgcatgcaatctttactattacttacttttcgatgaagttacttctatgtagtttactcgcataattttatacatatatgaat |
42686872 |
T |
|
| Q |
101 |
gtgatactatagatgagtttttacaatgatcctttcnnnnnnngt-agcactaagagagttgtatagaacaaaagtaggaaactactcagaacctattac |
199 |
Q |
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| T |
42686873 |
gtgatactatagatgagtttttacaatgatcctttctttttttgttagcactaagagagttgtatagaacaaaagtaggaaactactcagaacctattac |
42686972 |
T |
|
| Q |
200 |
aatgacaaaggatattgtattgcctgttactgttactgtaaagaaggatgttaagattgaagttgcaaatgagaataagagcaaaattgaggaacttgtt |
299 |
Q |
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| T |
42686973 |
aatgacaaaggatattgtattgcctgttactgttactgtaaagaaggatgttaagattgaagttgcaaatgagaataagagcaaaattgaggaacttgtt |
42687072 |
T |
|
| Q |
300 |
gaggtgaaagatcaagtggacgacaaagaaattcccggtcgcatcagtttaatgggattaactgattctgatgagttctttgatgttcctgaatcaacag |
399 |
Q |
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| T |
42687073 |
gaggtgaaagatcaagtggacgacaaagaaattcccggtcgcatcagtttaatgggattaactgattctgatgagttctttgatgttcctgaatcaacag |
42687172 |
T |
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| Q |
400 |
aatatgatcactatgataatcaat |
423 |
Q |
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| T |
42687173 |
aatatgatcactatgataatcaat |
42687196 |
T |
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