View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17748_high_1 (Length: 956)
Name: NF17748_high_1
Description: NF17748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17748_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 654; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 654; E-Value: 0
Query Start/End: Original strand, 1 - 734
Target Start/End: Complemental strand, 44154344 - 44153611
Alignment:
| Q |
1 |
atcaaatacatgacccctgatgatttccactatttctacggaagtattactactcttctttcttacttatttcatttgttaatgtttataatgttttggg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
44154344 |
atcaaatacatgacccctgatgatttccactatttctacggaagtattactactcttctttctgacttatttcatttgttaatgtttataatgttttggg |
44154245 |
T |
|
| Q |
101 |
taattaatattattattattgatcgatgcagaaaaaacaaaagaagaacaatttgaggacaactatgatgagcgggatgaagaatttggtattattgttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
44154244 |
taattaatattattattattgatcgatgcagaaaaaacaaaagaagaacaatttgaggacaactatgatgagcgggatgaagaatttggtattactgttt |
44154145 |
T |
|
| Q |
201 |
tttctgatttaaggatgtttcttcatgtgtttagaatgtgtctggtaattgttattgatggatgcatttacagttaatgaagaagattttgacgactacg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
44154144 |
tttctgatttaaggatgtttcttcatgtgtttagaatgtgtctggtaattgttattgattgatgcatttacagaaaatgaagaagattttgacgactacg |
44154045 |
T |
|
| Q |
301 |
acatttcaaactggaaaatcaaaggtatcagtgttctttctgattttatttgacaatgtttcatcatgattagttcaattcaaccgtgtgcatgtcttta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
44154044 |
acatttcaaactggaaaatcaaaggtattattgttctttctgattttatttgacaatgtttcatcatgattagttcaattcaactgtgtgcatgtcttta |
44153945 |
T |
|
| Q |
401 |
atttgaattttatttgaaatggaaactcaaagagagattttcggtcgttattattgttctttctgattgatttcatttgcttaatttactaataataacg |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44153944 |
atttgaattttatttgaaatggaaactcaaagagagattttcggtcgttattattgttcttcctgattgatttcatttgcttaatttactaataataacg |
44153845 |
T |
|
| Q |
501 |
tttcttcattatagtttgttcaattcaattgtgtgcgtgcttgtctgattaataattattgatgcagatgaggaccaaccaaagccgataaagacaaaat |
600 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44153844 |
tttcttaattatagtttgttcaattcaattgtgtgcgtgcttgtctgattaataattattgatgcagatgaggaccaaccaaagccgataaagacaaaat |
44153745 |
T |
|
| Q |
601 |
tttctgatggagatttcatcctccaagcaatggaggagaccatgctcaaacgacgttccccctggggtannnnnnnnnnnnctgatttcatttgtttcag |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
44153744 |
tttctgatggagatttcatcctccaagcaatggaggagaccatgctcaaacgacgttccccccggggtatttttgttttttctgatttcatttgtttcag |
44153645 |
T |
|
| Q |
701 |
atttaagattgtttcattatgattagttaaattc |
734 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
44153644 |
atttaagattgtttcattatgattagttaaattc |
44153611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 1 - 734
Target Start/End: Complemental strand, 40899069 - 40898330
Alignment:
| Q |
1 |
atcaaatacatgacccctgatgatttccactatttctacggaagtattactactcttctttcttacttatttcatttgttaatgtttataatgttttggg |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
40899069 |
atcaaatgcatgacccctgatgatttccactatttctaccgaagtattactactcttctttctgacttatttcagttgttaatgtttataatgttttggg |
40898970 |
T |
|
| Q |
101 |
taattaatattattattattgatcgatgcagaaaaaacaaaagaagaacaatttgaggacaactatgatgagcgggatgaagaatttggtattattgttt |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40898969 |
taattattattattattattgatcgatgcagaaaaaacaaaagaagaacaatttgaggacagctatgatgagcgggatgaagaatttggtattattgttt |
40898870 |
T |
|
| Q |
201 |
tttctgatttaaggatgtttcttcatgtgtttagaatgtgtctggtaattgttattgatggatgcatttacagttaatgaagaagattttgacgactacg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
40898869 |
tttctgatttaaggatgtttcttcatgtgtttagaatgtgtctggtaattattattgattgatacatttacagaaaatgaagaagattttgacgactacg |
40898770 |
T |
|
| Q |
301 |
acatttcaaactggaaaatcaaaggtatcagtgttctttctgattttatttgacaatgtttcatcatgattagttcaattcaaccgtgtgcatgtcttta |
400 |
Q |
| |
|
|||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40898769 |
acatttcatactggaaaatcaaaggtattattgttctttctgattttatttgacaatgtttcatcatgattagttcaattcaaccgtgtgcatgtcttta |
40898670 |
T |
|
| Q |
401 |
atttgaattttatttgaaatggaaactcaaagagagattttcggtcgttattattgttctttctgattgatttcatttgct--------taatttactaa |
492 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
40898669 |
atttgaattttatttgaaatggaaactc--agagagattttcggttgttattattgttctttctgattgatttcatttgcttaatttactaatttactaa |
40898572 |
T |
|
| Q |
493 |
taataacgtttcttcattatagtttgttcaattcaattgtgtgcgtgcttgtctgattaataattattgatgcagatgaggaccaaccaaagccgataaa |
592 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
40898571 |
taataacgtttcttcattatagtttgttcaattcaattgtgtgcgtgcttgtctgattaataattattgatgcagatgaggaccaaccaaaggcgataaa |
40898472 |
T |
|
| Q |
593 |
gacaaaattttctgatggagatttcatcctccaagcaatggaggagaccatgctcaaacgacgttccccctggggtannnnnnnnnnnnctgatttcatt |
692 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||| |||||| ||||||||||| |
|
|
| T |
40898471 |
gacaaaattttctgatggagatttcatcctccaagcattcgaggagaccatgctcaaacgacgtgtccccgggggtattattgttctttctgatttcatt |
40898372 |
T |
|
| Q |
693 |
tgtttcagatttaagattgtttcattatgattagttaaattc |
734 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
40898371 |
tgtttcggatttaagattgtttcattttgattagttcaattc |
40898330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 737 - 938
Target Start/End: Original strand, 40894720 - 40894924
Alignment:
| Q |
737 |
tgattattgattcatgcaggaggaaaaggcaaagaatctgaggacatttcaaccttggaggagctgagctctgatgtgccgaagtggaaatcagcagatg |
836 |
Q |
| |
|
||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||| |||||| |
|
|
| T |
40894720 |
tgattattgattcttgtaggaggaaaagacaaagaatctgaggacatttcaaccttggaggagcttagctctgatgagcagaagtggaaatcaacagatg |
40894819 |
T |
|
| Q |
837 |
cgaatgatgattctgaagatgattagtt---tgatgattttgaaggcaacaccaaaatctcttgcgacaatgacaagcgaaaaatgtcacttgatgtata |
933 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
40894820 |
caaatgatgattctgaagatgattagtttgatgatgattctgaaggcaacaccaaaaactcttgcgacattgacaagcgaaaaatgtcacttgatgtata |
40894919 |
T |
|
| Q |
934 |
atagt |
938 |
Q |
| |
|
||||| |
|
|
| T |
40894920 |
atagt |
40894924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 737 - 878
Target Start/End: Complemental strand, 44153575 - 44153434
Alignment:
| Q |
737 |
tgattattgattcatgcaggaggaaaaggcaaagaatctgaggacatttcaaccttggaggagctgagctctgatgtgccgaagtggaaatcagcagatg |
836 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44153575 |
tgattattgattcatgcaggaggaaaaggcaaagaatctgaggacatttcaaccttggaggagctgagctctgatgtgccgaagtggaaatcagcagatg |
44153476 |
T |
|
| Q |
837 |
cgaatgatgattctgaagatgattagtttgatgattttgaag |
878 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
44153475 |
cgaatgatgattctgaagacgattagtttgatgattctgaag |
44153434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 740 - 921
Target Start/End: Complemental strand, 40898301 - 40898104
Alignment:
| Q |
740 |
ttattgattcatgcaggaggaaaaggcaaagaatctgaggacatttcaaccttggaggagctgagc---tctgatgtgccgaagtggaaatcagcagatg |
836 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
40898301 |
ttattgattcatgcaggaggaaaaggcaaagaatctgaggacatttcaaccttggaggagctgagctcttctgatgtgcagaagtggaaatcagcagatg |
40898202 |
T |
|
| Q |
837 |
cgaatgatgatt------------ctgaagatg-attagtttgatgattttgaaggcaacaccaaaatctcttgcgacaatgacaagcgaaaaatgtc |
921 |
Q |
| |
|
| |||||||||| |||| ||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40898201 |
caaatgatgattctgtttttggtgctgattatgccttagtttgatgattctgaaggcaaaaccaaaatctcttgcgacaatgacaagcgaaaaatgtc |
40898104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 682 - 734
Target Start/End: Original strand, 40894632 - 40894684
Alignment:
| Q |
682 |
ctgatttcatttgtttcagatttaagattgtttcattatgattagttaaattc |
734 |
Q |
| |
|
||||||| ||||||||||||||||| | |||||||| |||||||||| ||||| |
|
|
| T |
40894632 |
ctgattttatttgtttcagatttaacaatgtttcatcatgattagttcaattc |
40894684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 348 - 408
Target Start/End: Original strand, 40894651 - 40894711
Alignment:
| Q |
348 |
atttgacaatgtttcatcatgattagttcaattcaaccgtgtgcatgtctttaatttgaat |
408 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |||||| ||| | ||||||||| |
|
|
| T |
40894651 |
atttaacaatgtttcatcatgattagttcaattcaattgtgtgcttgtttagaatttgaat |
40894711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 40893952 - 40894013
Alignment:
| Q |
3 |
caaatacatgacccctgatgatttccactatttctacggaagtattactactcttctttctt |
64 |
Q |
| |
|
||||||| ||||| ||| ||||||| ||||| || ||| |||||||||||||||||| |||| |
|
|
| T |
40893952 |
caaatacctgacctctgctgatttcaactatgtccacgaaagtattactactcttctatctt |
40894013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 40899318 - 40899273
Alignment:
| Q |
42 |
aagtattactactcttctttcttacttatttcatttgttaatgttt |
87 |
Q |
| |
|
||||||||||||||||||| || | |||||||||||||||||||| |
|
|
| T |
40899318 |
aagtattactactcttcttgctggcatatttcatttgttaatgttt |
40899273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University