View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17748_high_4 (Length: 396)

Name: NF17748_high_4
Description: NF17748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17748_high_4
NF17748_high_4
[»] chr7 (1 HSPs)
chr7 (22-390)||(46075936-46076291)
[»] chr3 (2 HSPs)
chr3 (349-384)||(535380-535415)
chr3 (237-308)||(535411-535482)
[»] scaffold1504 (1 HSPs)
scaffold1504 (349-384)||(352-387)
[»] chr8 (3 HSPs)
chr8 (349-384)||(22220947-22220982)
chr8 (236-308)||(22220978-22221050)
chr8 (236-308)||(22227320-22227392)
[»] chr6 (1 HSPs)
chr6 (349-384)||(12351160-12351195)
[»] scaffold1303 (1 HSPs)
scaffold1303 (236-308)||(2032-2104)
[»] chr4 (1 HSPs)
chr4 (236-308)||(1834714-1834786)
[»] chr2 (1 HSPs)
chr2 (236-308)||(18797667-18797739)
[»] chr1 (1 HSPs)
chr1 (236-308)||(35594639-35594711)


Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 22 - 390
Target Start/End: Original strand, 46075936 - 46076291
Alignment:
Q  22 attcggtaagtt-gtctcgaatctctaattaatagataagctatgaaatgtatgagttagtgcttacttttcacaggtaaggatgtaaaacagtgttcat 120  Q
    |||||||||||| |||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||     
T  46075936 attcggtaagtttgtctcgaatctctaattaatagctaagcaacgaaatgtatgagttagtgcttacttttcacaggtaaggatgtaagacaatgttcag 46076035  T
Q  121 catgcgtaagattttaagtctccatattttagaaataaaaaataatcaaccaaaaattaactgaactgtaggttcccagtcattttatagaaataaaaat 220  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  46076036 catgcgtaagattttaagtctccatattttagaaatgaaaaataatcaaccaaaaattaactgaactgaaggttcccagtcattttatagaaataaaaat 46076135  T
Q  221 tgaaatatactacaatttcttcaacagtaatttctaccaataacacttccaatttataagtacaaaaacaaacttaaaagatatgagataccaagccatc 320  Q
    ||||||||||| ||||||||| |||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||     
T  46076136 tgaaatatactgcaatttcttgaacagtaatttctaccaacaacacttccaattcataagtacagaaacaaacttaaaagatatgagataccaagccat- 46076234  T
Q  321 tcttactaaagaactctacttgatgtactgagaaacccatttgaaaccatcaccataacccatattcttc 390  Q
                 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  46076235 -------------ctctatttgatgtactgagaaacccatttgaaaccatcaccataacccattttcttc 46076291  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 384
Target Start/End: Complemental strand, 535415 - 535380
Alignment:
Q  349 tgagaaacccatttgaaaccatcaccataacccata 384  Q
    ||||||||||||||||||||||||||||||||||||    
T  535415 tgagaaacccatttgaaaccatcaccataacccata 535380  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 308
Target Start/End: Complemental strand, 535482 - 535411
Alignment:
Q  237 ttcttcaacagtaatttctaccaataacacttccaatttataagtacaaaaacaaacttaaaagatatgaga 308  Q
    ||||| || ||||||||||||||| || |||||||||| || | |||| |||||||||||||||| ||||||    
T  535482 ttcttgaaaagtaatttctaccaacaagacttccaattcatcattacataaacaaacttaaaagacatgaga 535411  T

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Target: scaffold1504 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold1504
Description:

Target: scaffold1504; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 384
Target Start/End: Complemental strand, 387 - 352
Alignment:
Q  349 tgagaaacccatttgaaaccatcaccataacccata 384  Q
    |||||||| |||||||||||||||||||||||||||    
T  387 tgagaaactcatttgaaaccatcaccataacccata 352  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 384
Target Start/End: Complemental strand, 22220982 - 22220947
Alignment:
Q  349 tgagaaacccatttgaaaccatcaccataacccata 384  Q
    ||||||||||||||||||||||||||||||| ||||    
T  22220982 tgagaaacccatttgaaaccatcaccataactcata 22220947  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 308
Target Start/End: Complemental strand, 22221050 - 22220978
Alignment:
Q  236 tttcttcaacagtaatttctaccaataacacttccaatttataagtacaaaaacaaacttaaaagatatgaga 308  Q
    |||||| || |||||| |||||||| |  |||||||||| || |||||| ||||||||||||| || ||||||    
T  22221050 tttcttgaaaagtaatgtctaccaacactacttccaattcatcagtacagaaacaaacttaaatgacatgaga 22220978  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 308
Target Start/End: Complemental strand, 22227392 - 22227320
Alignment:
Q  236 tttcttcaacagtaatttctaccaataacacttccaatttataagtacaaaaacaaacttaaaagatatgaga 308  Q
    |||||| || |||||| |||||||| |  |||||||||| || |||||| ||||||||||||| || ||||||    
T  22227392 tttcttgaaaagtaatgtctaccaacactacttccaattcatcagtacagaaacaaacttaaatgacatgaga 22227320  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 384
Target Start/End: Complemental strand, 12351195 - 12351160
Alignment:
Q  349 tgagaaacccatttgaaaccatcaccataacccata 384  Q
    ||||||||||||||||||||||||||||||| ||||    
T  12351195 tgagaaacccatttgaaaccatcaccataactcata 12351160  T

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Target: scaffold1303 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1303
Description:

Target: scaffold1303; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 308
Target Start/End: Complemental strand, 2104 - 2032
Alignment:
Q  236 tttcttcaacagtaatttctaccaataacacttccaatttataagtacaaaaacaaacttaaaagatatgaga 308  Q
    |||||| || |||||| |||||||| |  |||||||||| || |||||| ||||||||||||| || ||||||    
T  2104 tttcttgaaaagtaatgtctaccaacactacttccaattcatcagtacataaacaaacttaaatgacatgaga 2032  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 308
Target Start/End: Complemental strand, 1834786 - 1834714
Alignment:
Q  236 tttcttcaacagtaatttctaccaataacacttccaatttataagtacaaaaacaaacttaaaagatatgaga 308  Q
    |||||| || |||||| |||||||| |  |||||||||| || |||||| ||||||||||||| || ||||||    
T  1834786 tttcttgaaaagtaatgtctaccaacactacttccaattcatcagtacagaaacaaacttaaatgacatgaga 1834714  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 308
Target Start/End: Original strand, 18797667 - 18797739
Alignment:
Q  236 tttcttcaacagtaatttctaccaataacacttccaatttataagtacaaaaacaaacttaaaagatatgaga 308  Q
    |||||| || |||||| |||||||| |  |||||||||| || |||||| ||||||||||||| || ||||||    
T  18797667 tttcttgaaaagtaatgtctaccaacactacttccaattcatcagtacataaacaaacttaaatgacatgaga 18797739  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 308
Target Start/End: Original strand, 35594639 - 35594711
Alignment:
Q  236 tttcttcaacagtaatttctaccaataacacttccaatttataagtacaaaaacaaacttaaaagatatgaga 308  Q
    |||||| || |||||| |||||||| |  |||||||||| || |||||| ||||||||||||| || ||||||    
T  35594639 tttcttgaaaagtaatgtctaccaacactacttccaattcatcagtacagaaacaaacttaaatgacatgaga 35594711  T

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