View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17748_high_7 (Length: 332)
Name: NF17748_high_7
Description: NF17748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17748_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 47365138 - 47364836
Alignment:
| Q |
18 |
agacgaacccacggtggcactgtgattttgttgaagcttgatactgtagctttcgacaaaatcactatgacacactgcaatgttgccaaactcattgcca |
117 |
Q |
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| T |
47365138 |
agacgaacccacggtggcactgtgattttgttgaagcttgatactgtagctttcgacaaaatcactacgacacaccgcaatgttgccaaactcattgcca |
47365039 |
T |
|
| Q |
118 |
aaataaacacttagtcaaataaacattacacctaccttctcttgagtggaatgtgtgt--cgtgtaaagagcttctttaccatgctaaaccaacccatct |
215 |
Q |
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| T |
47365038 |
aaataaacacttagtcaaataaacattacacctaccttctcttgagtggaatgtatgtcccgtgtaaagagcttctttaccatgctaaaccaacccatct |
47364939 |
T |
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| Q |
216 |
tggccatttagaaatatcacacagactaacttcagtttctgttatctgaa-aattgctcgttggagtcttctctttttctgcatgaattacaaatttaca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47364938 |
tggccatttagaaatatcacacagactaacttcagtttctgttatctgaagaattgctcgttggagtcttctctttttctgcatgaattacaaatttaca |
47364839 |
T |
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| Q |
315 |
aat |
317 |
Q |
| |
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||| |
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| T |
47364838 |
aat |
47364836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 55
Target Start/End: Complemental strand, 38692840 - 38692811
Alignment:
| Q |
26 |
ccacggtggcactgtgattttgttgaagct |
55 |
Q |
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| T |
38692840 |
ccacggtggcactgtgattttgttgaagct |
38692811 |
T |
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