View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17748_high_8 (Length: 317)

Name: NF17748_high_8
Description: NF17748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17748_high_8
NF17748_high_8
[»] chr8 (3 HSPs)
chr8 (1-307)||(26972735-26973041)
chr8 (1-307)||(14759190-14759496)
chr8 (201-313)||(23133137-23133249)
[»] chr4 (3 HSPs)
chr4 (61-313)||(54477963-54478208)
chr4 (228-307)||(14307291-14307370)
chr4 (240-313)||(46785030-46785103)
[»] scaffold0036 (1 HSPs)
scaffold0036 (1-274)||(68138-68411)
[»] chr2 (8 HSPs)
chr2 (197-313)||(16321925-16322041)
chr2 (242-298)||(26790842-26790898)
chr2 (201-313)||(14654232-14654344)
chr2 (237-304)||(19264932-19264999)
chr2 (237-304)||(40327694-40327761)
chr2 (258-304)||(177030-177076)
chr2 (240-314)||(39012049-39012123)
chr2 (237-313)||(42403772-42403848)
[»] chr7 (1 HSPs)
chr7 (207-314)||(16770518-16770625)
[»] chr3 (6 HSPs)
chr3 (201-308)||(26433255-26433362)
chr3 (240-304)||(17718922-17718986)
chr3 (240-304)||(19020151-19020215)
chr3 (204-304)||(38647746-38647846)
chr3 (240-314)||(3660169-3660243)
chr3 (201-286)||(11896631-11896716)
[»] scaffold0214 (1 HSPs)
scaffold0214 (240-314)||(8486-8560)
[»] chr1 (1 HSPs)
chr1 (201-313)||(20284332-20284444)
[»] chr5 (4 HSPs)
chr5 (249-304)||(6641580-6641635)
chr5 (258-313)||(23621176-23621231)
chr5 (240-314)||(23944537-23944611)
chr5 (197-313)||(7813303-7813419)


Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 26972735 - 26973041
Alignment:
Q  1 tcatcagaagaaagaaaaatcggatccataggctgcaactcccttgtggtacatggtcgaatgatagtgacaccctccaagaagaagcacaaaattattt 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||    
T  26972735 tcatcagaagaaagaaaaatcggatccataggcttcaactcccttgtggtacatggtcatatgatagtgacactctccaagaagaagcacaaaattattt 26972834  T
Q  101 taaagctttcttcagtggtatcgtacctcaccatgacagaagtttcaatgaaggcatccaccctaccatagatgacgatgggaagctctctttactctct 200  Q
     |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  26972835 caaagctttcttcagtggtatcgaacctaaccatgacagaagtttcaatgaaggcatccaccctaccatagatgaagattggaagctctctttactctct 26972934  T
Q  201 ccaatcaccaaaaaagaggtctttactgctcttaattctatgaagccctacaaagcccctggccccgatggttttcactgcatcttttttaaacaatact 300  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26972935 ccaatcaccaaaagagaggtctttactgctcttaattctatgaagccctacaaagcccctggccccgatggctttcactgcatcttttttaaacaatact 26973034  T
Q  301 ggcatat 307  Q
    |||||||    
T  26973035 ggcatat 26973041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 14759190 - 14759496
Alignment:
Q  1 tcatcagaagaaagaaaaatcggatccataggctgcaactcccttgtggtacatggtcgaatgatagtgacaccctccaagaagaagcacaaaattattt 100  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||    
T  14759190 tcattagaagaaagaaaaatcgggtccataggctgcaactcccttgtggtacatggtcatatgatagtgacactctccaagaagaagcacaaaattattt 14759289  T
Q  101 taaagctttcttcagtggtatcgtacctcaccatgacagaagtttcaatgaaggcatccaccctaccatagatgacgatgggaagctctctttactctct 200  Q
     |||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14759290 caaagctttcttcagtggtatcgaacctaaccatgacagaaatttcaatgaaggcatccaccctaccatagatgacgatgggaagctctctttactctct 14759389  T
Q  201 ccaatcaccaaaaaagaggtctttactgctcttaattctatgaagccctacaaagcccctggccccgatggttttcactgcatcttttttaaacaatact 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||    
T  14759390 ccaatcaccaaaaaagaggtctttactgctcttaattctatgaagccctacaaagcccctggccccgatggctttcactacatcttttttaaacaatcct 14759489  T
Q  301 ggcatat 307  Q
    |||||||    
T  14759490 ggcatat 14759496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 201 - 313
Target Start/End: Complemental strand, 23133249 - 23133137
Alignment:
Q  201 ccaatcaccaaaaaagaggtctttactgctcttaattctatgaagccctacaaagcccctggccccgatggttttcactgcatcttttttaaacaatact 300  Q
    |||||||||||||| || || | | |||| ||||| || ||||| ||||||||||||||||| || |||||||| || |||||||| || || || ||||    
T  23133249 ccaatcaccaaaaatgaagtttatgctgcccttaactccatgaaaccctacaaagcccctggtccggatggtttccattgcatcttcttcaagcagtact 23133150  T
Q  301 ggcatattcttgg 313  Q
    |||| ||| ||||    
T  23133149 ggcacattgttgg 23133137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 61 - 313
Target Start/End: Complemental strand, 54478208 - 54477963
Alignment:
Q  61 atgatagtgacaccctccaagaagaagcacaaaattattttaaagctttcttcagtggtatcgtacctcaccatgacagaagtttcaatgaaggcatcca 160  Q
    ||||||||||||| |||||||||||||| ||||||||||| ||  |||||||| |||| | |  |||  |||||||| |||| |||||||  || || ||    
T  54478208 atgatagtgacactctccaagaagaagctcaaaattatttcaagactttcttcggtggcaaccaaccaaaccatgaccgaagcttcaatgttggtattca 54478109  T
Q  161 ccctaccatagatgacgatgggaagctctctttactctctccaatcaccaaaaaagaggtctttactgctcttaattctatgaagccctacaaagcccct 260  Q
    ||||  ||       ||| || ||||| ||||||  ||| |||||||||||||||||||| ||| || | ||||| |||||||||||||| |||||| |     
T  54478108 cccttaca-------cgagggtaagctttctttaacctccccaatcaccaaaaaagaggtgtttgcttcccttaactctatgaagccctataaagcctca 54478016  T
Q  261 ggccccgatggttttcactgcatcttttttaaacaatactggcatattcttgg 313  Q
    ||||| ||||| || |||| |||||| || |||||||| ||||| ||| ||||    
T  54478015 ggcccagatggcttccactacatcttcttcaaacaatattggcacattgttgg 54477963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 307
Target Start/End: Original strand, 14307291 - 14307370
Alignment:
Q  228 gctcttaattctatgaagccctacaaagcccctggccccgatggttttcactgcatcttttttaaacaatactggcatat 307  Q
    ||||| || |||||||| || |||||| || ||||||| ||||||||||| ||||| || || |||||||| ||||||||    
T  14307291 gctctgaactctatgaaaccttacaaatcctctggcccagatggttttcaatgcattttcttcaaacaatattggcatat 14307370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 313
Target Start/End: Complemental strand, 46785103 - 46785030
Alignment:
Q  240 atgaagccctacaaagcccctggccccgatggttttcactgcatcttttttaaacaatactggcatattcttgg 313  Q
    ||||| ||||||||| | ||||| || |||||||| || |||||||| || |||||||||||||| ||| ||||    
T  46785103 atgaaaccctacaaatctcctggtccggatggtttccaatgcatcttcttcaaacaatactggcacattgttgg 46785030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 68138 - 68411
Alignment:
Q  1 tcatcagaagaaagaaaaatcggatccataggctgcaactcccttgtggtacatggtcgaatgatagtgacaccctccaagaagaagcacaaaattattt 100  Q
    ||||||||||||| | |||| | |||||||| || ||||||||||||||||| |||||   |||||| ||||  || ||||| || || ||||| |||||    
T  68138 tcatcagaagaaaaagaaatagaatccatagacttcaactcccttgtggtacttggtcctctgatagcgacattcttcaagaggaggcccaaaactattt 68237  T
Q  101 taaagctttcttcagtggtatcgtacctcaccatgacagaagtttcaatgaaggcatccaccctaccatagatgacgatgggaagctctctttactctct 200  Q
     ||   |||||||||||| | |  |||| |||||||  ||  |||||||||||||   |||||| |||| |||| |||||||||  | ||||||   |||    
T  68238 caagaatttcttcagtggcaaccaacctaaccatgatcgatctttcaatgaaggcgctcacccttccattgatgccgatgggaaaatttctttaacttct 68337  T
Q  201 ccaatcaccaaaaaagaggtctttactgctcttaattctatgaagccctacaaagcccctggccccgatggttt 274  Q
    ||||||||||||   || || ||  |||| |||||  |||| |||||| ||||||||||||||||| |||||||    
T  68338 ccaatcaccaaacctgaagtgttcgctgcccttaaccctataaagcccaacaaagcccctggccccaatggttt 68411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 197 - 313
Target Start/End: Original strand, 16321925 - 16322041
Alignment:
Q  197 ctctccaatcaccaaaaaagaggtctttactgctcttaattctatgaagccctacaaagcccctggccccgatggttttcactgcatcttttttaaacaa 296  Q
    |||||| || |||||||||||||| ||| |||| || || || ||||| ||||||||||| ||||| |||||||| ||||| ||||| || |||||||||    
T  16321925 ctctcctattaccaaaaaagaggtttttgctgccctcaactccatgaaaccctacaaagcacctggtcccgatggctttcattgcattttctttaaacaa 16322024  T
Q  297 tactggcatattcttgg 313  Q
    |||||||| ||| ||||    
T  16322025 tactggcacattgttgg 16322041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 26790842 - 26790898
Alignment:
Q  242 gaagccctacaaagcccctggccccgatggttttcactgcatcttttttaaacaata 298  Q
    |||||||||||||||||||||||||||||||||||| || || ||||||||||||||    
T  26790842 gaagccctacaaagcccctggccccgatggttttcattgtattttttttaaacaata 26790898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 313
Target Start/End: Complemental strand, 14654344 - 14654232
Alignment:
Q  201 ccaatcaccaaaaaagaggtctttactgctcttaattctatgaagccctacaaagcccctggccccgatggttttcactgcatcttttttaaacaatact 300  Q
    |||||||||||||| || || | | |||| ||||| || ||||||||||||||||||||||| || |||||||| || |||||||| || || || ||||    
T  14654344 ccaatcaccaaaaatgaagtttatgctgcccttaactccatgaagccctacaaagcccctggtccagatggtttccattgcatcttcttcaagcagtact 14654245  T
Q  301 ggcatattcttgg 313  Q
     ||||||| ||||    
T  14654244 agcatattattgg 14654232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 19264932 - 19264999
Alignment:
Q  237 tctatgaagccctacaaagcccctggccccgatggttttcactgcatcttttttaaacaatactggca 304  Q
    ||||||||||| |||||||||||||| || ||||| ||||| ||||| || || ||||||||||||||    
T  19264932 tctatgaagccatacaaagcccctggtcctgatgggtttcattgcattttcttcaaacaatactggca 19264999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 40327694 - 40327761
Alignment:
Q  237 tctatgaagccctacaaagcccctggccccgatggttttcactgcatcttttttaaacaatactggca 304  Q
    ||||||||||| |||||||||||||| || || || ||||| ||||| || || ||||||||||||||    
T  40327694 tctatgaagccttacaaagcccctggtcctgacgggtttcattgcattttcttcaaacaatactggca 40327761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 304
Target Start/End: Original strand, 177030 - 177076
Alignment:
Q  258 cctggccccgatggttttcactgcatcttttttaaacaatactggca 304  Q
    |||||||| ||||||||||| ||||||||||| |||||||| |||||    
T  177030 cctggcccagatggttttcaatgcatctttttcaaacaatattggca 177076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 314
Target Start/End: Original strand, 39012049 - 39012123
Alignment:
Q  240 atgaagccctacaaagcccctggccccgatggttttcactgcatcttttttaaacaatactggcatattcttgga 314  Q
    ||||| ||||||||||||||||| || ||||| || || ||||| |||||||| ||||| ||||| ||| |||||    
T  39012049 atgaaaccctacaaagcccctggaccagatggcttccaatgcatattttttaagcaatattggcacattattgga 39012123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 313
Target Start/End: Complemental strand, 42403848 - 42403772
Alignment:
Q  237 tctatgaagccctacaaagcccctggccccgatggttttcactgcatcttttttaaacaatactggcatattcttgg 313  Q
    ||||||||||| ||||| || ||||| || |||||||| || |||||||| || |||||||| ||||| ||| ||||    
T  42403848 tctatgaagccttacaaggcacctggtcctgatggtttccattgcatcttcttcaaacaatattggcacattgttgg 42403772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 314
Target Start/End: Complemental strand, 16770625 - 16770518
Alignment:
Q  207 accaaaaaagaggtctttactgctcttaattctatgaagccctacaaagcccctggccccgatggttttcactgcatcttttttaaacaatactggcata 306  Q
    ||||||||||| ||| || |||| ||||| |||||||| || |||||||| || || || |||||||| || ||||| ||||| |||||||||||||| |    
T  16770625 accaaaaaagaagtccttgctgcccttaactctatgaaaccttacaaagcaccaggtccggatggtttccaatgcatttttttcaaacaatactggcaca 16770526  T
Q  307 ttcttgga 314  Q
    || |||||    
T  16770525 ttattgga 16770518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 308
Target Start/End: Complemental strand, 26433362 - 26433255
Alignment:
Q  201 ccaatcaccaaaaaagaggtctttactgctcttaattctatgaagccctacaaagcccctggccccgatggttttcactgcatcttttttaaacaatact 300  Q
    |||||||| ||||| || || | | |||| ||||| || |||||||| |||||||||||||| || |||||||| || |||||||| || ||||| ||||    
T  26433362 ccaatcactaaaaatgaagtttatgctgcccttaactccatgaagccttacaaagcccctggtcctgatggtttccattgcatcttcttcaaacagtact 26433263  T
Q  301 ggcatatt 308  Q
    ||||||||    
T  26433262 ggcatatt 26433255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 304
Target Start/End: Complemental strand, 17718986 - 17718922
Alignment:
Q  240 atgaagccctacaaagcccctggccccgatggttttcactgcatcttttttaaacaatactggca 304  Q
    |||||||| ||||||||||| || || ||||||||||| || |||||||| ||||| ||||||||    
T  17718986 atgaagccgtacaaagcccccggtccagatggttttcaatgtatctttttcaaacagtactggca 17718922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 304
Target Start/End: Complemental strand, 19020215 - 19020151
Alignment:
Q  240 atgaagccctacaaagcccctggccccgatggttttcactgcatcttttttaaacaatactggca 304  Q
    |||||||| ||||||||||| || || ||||||||||| || |||||||| ||||| ||||||||    
T  19020215 atgaagccgtacaaagcccccggtccagatggttttcaatgtatctttttcaaacagtactggca 19020151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 304
Target Start/End: Complemental strand, 38647846 - 38647746
Alignment:
Q  204 atcaccaaaaaagaggtctttactgctcttaattctatgaagccctacaaagcccctggccccgatggttttcactgcatcttttttaaacaatactggc 303  Q
    ||||||||||| ||||| ||| |||| ||||| || ||||| || |||||||| || ||||| |||||||| || || ||||| || |||||||| ||||    
T  38647846 atcaccaaaaatgaggtgtttgctgcacttaactccatgaaaccttacaaagcacccggcccagatggtttccattgtatcttcttcaaacaatattggc 38647747  T
Q  304 a 304  Q
    |    
T  38647746 a 38647746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 314
Target Start/End: Complemental strand, 3660243 - 3660169
Alignment:
Q  240 atgaagccctacaaagcccctggccccgatggttttcactgcatcttttttaaacaatactggcatattcttgga 314  Q
    ||||| ||||||||||||||||| || ||||| || || ||||| |||||||| ||||| ||||| ||| |||||    
T  3660243 atgaaaccctacaaagcccctggaccagatggcttccaatgcatattttttaagcaatattggcacattattgga 3660169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 286
Target Start/End: Original strand, 11896631 - 11896716
Alignment:
Q  201 ccaatcaccaaaaaagaggtctttactgctcttaattctatgaagccctacaaagcccctggccccgatggttttcactgcatctt 286  Q
    |||||||||||||| || || | |  ||| ||||| || ||||| ||||||||||||||||| || |||||||| || ||||||||    
T  11896631 ccaatcaccaaaaatgaagtttatgttgcccttaactccatgaaaccctacaaagcccctggtccggatggtttccattgcatctt 11896716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 314
Target Start/End: Original strand, 8486 - 8560
Alignment:
Q  240 atgaagccctacaaagcccctggccccgatggttttcactgcatcttttttaaacaatactggcatattcttgga 314  Q
    |||||||||||||||||||||||||| ||||||||||| || || || ||||||||||  ||||| ||| |||||    
T  8486 atgaagccctacaaagcccctggccctgatggttttcattgtattttctttaaacaattttggcacattgttgga 8560  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 201 - 313
Target Start/End: Original strand, 20284332 - 20284444
Alignment:
Q  201 ccaatcaccaaaaaagaggtctttactgctcttaattctatgaagccctacaaagcccctggccccgatggttttcactgcatcttttttaaacaatact 300  Q
    |||||||||||||| || || | | |||| ||||| || ||||| ||||||||||||||||| || |||||||| || |||||||| || || || ||||    
T  20284332 ccaatcaccaaaaatgaagtttatgctgcccttaactccatgaaaccctacaaagcccctggtccggatggtttccattgcatcttcttcaagcagtact 20284431  T
Q  301 ggcatattcttgg 313  Q
    |||| ||| ||||    
T  20284432 ggcacattgttgg 20284444  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 304
Target Start/End: Complemental strand, 6641635 - 6641580
Alignment:
Q  249 tacaaagcccctggccccgatggttttcactgcatcttttttaaacaatactggca 304  Q
    ||||||||||||||||| ||||||||||||||||  || || | ||||||||||||    
T  6641635 tacaaagcccctggccctgatggttttcactgcaatttcttcatacaatactggca 6641580  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 258 - 313
Target Start/End: Complemental strand, 23621231 - 23621176
Alignment:
Q  258 cctggccccgatggttttcactgcatcttttttaaacaatactggcatattcttgg 313  Q
    |||||||| ||||| || || |||||||||||||||||||| ||||||||| ||||    
T  23621231 cctggcccagatggcttccattgcatcttttttaaacaatattggcatattgttgg 23621176  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 314
Target Start/End: Original strand, 23944537 - 23944611
Alignment:
Q  240 atgaagccctacaaagcccctggccccgatggttttcactgcatcttttttaaacaatactggcatattcttgga 314  Q
    ||||| |||| ||||||||||||||| ||||||||||| || ||||| || || |||||||| || ||| |||||    
T  23944537 atgaaacccttcaaagcccctggcccagatggttttcaatgtatcttcttcaagcaatactgacacattgttgga 23944611  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 313
Target Start/End: Original strand, 7813303 - 7813419
Alignment:
Q  197 ctctccaatcaccaaaaaagaggtctttactgctcttaattctatgaagccctacaaagcccctggccccgatggttttcactgcatcttttttaaacaa 296  Q
    |||||| ||||||||||| || || ||| || | || || |||||||| || ||||||||||| || || || ||||| || || ||||| || |||||     
T  7813303 ctctcccatcaccaaaaatgaagtttttgctaccctcaagtctatgaaaccttacaaagccccaggacctgacggtttccattgtatcttcttcaaacag 7813402  T
Q  297 tactggcatattcttgg 313  Q
    |||||||||||| ||||    
T  7813403 tactggcatattgttgg 7813419  T

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