View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17748_low_12 (Length: 312)
Name: NF17748_low_12
Description: NF17748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17748_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 11 - 296
Target Start/End: Complemental strand, 44085537 - 44085249
Alignment:
| Q |
11 |
cataggaacagaactataaattgaaatatacataaaatgagctggaaacagtgattaagctagatttgccattaggcaccagcaaatatttgaagttagt |
110 |
Q |
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| T |
44085537 |
catagaaacagaactataaattgaaatatacataaaatgagctggaaacagtgattaagctagatttgccattaggcaccagcaaatttttgaagttagt |
44085438 |
T |
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| Q |
111 |
atttaattaaccaagggagtaaatnnnnnnnttgaaatccttctgagatatgataggaacattaaaat----tatatatcctagatcttaccatatatat |
206 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||| ||||||||| |||||| ||| |||||| |
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| T |
44085437 |
atttaattaaccaagggagtaaataaaaaaattgaaatccttctgagatatgataggaacataacaattaaatatatatccaagatctaacc--atatat |
44085340 |
T |
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| Q |
207 |
tcattggggttgttc-ttttttcaggtagctgttgatggagaatcttaccataagacttgcttcaagtgcacacatggaggttgtataatc |
296 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
44085339 |
tcattggggttgttctttttttcaggtagctgttgatggagaatcttaccataagaattgcttcaggtgcacacatggaggttgtataatc |
44085249 |
T |
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