View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17748_low_13 (Length: 288)
Name: NF17748_low_13
Description: NF17748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17748_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 79 - 272
Target Start/End: Original strand, 23257992 - 23258187
Alignment:
| Q |
79 |
aaaaactattatctataacggcttactaaagcttatttccaatgccattaaaaat--actaagacttatttccattctactttaatttggaggagggaag |
176 |
Q |
| |
|
|||||||| | ||||||||| |||| | |||||||||||||||||||| ||| | ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23257992 |
aaaaactactgtctataacgacttattgaagcttatttccaatgccataaaagaagaactaaaacttatttccattctactttaatttggaggagggaag |
23258091 |
T |
|
| Q |
177 |
aaaatggcatcagcggtcctctttgaacggaagagtttctcaacttccggatctacattgaaagcagcctgcagaactgtgggtgacagtgccttc |
272 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
23258092 |
aaaatggcatcagcagtcctctttgaacggaagagcttctcaacttctggatcaacattgaaagcagcctgcagaactgtaggtgatagtgccttc |
23258187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 79 - 272
Target Start/End: Original strand, 23275870 - 23276065
Alignment:
| Q |
79 |
aaaaactattatctataacggcttactaaagcttatttccaatgccattaaaaat--actaagacttatttccattctactttaatttggaggagggaag |
176 |
Q |
| |
|
|||||||| | ||||||||| |||| | |||||||||||||||||||| ||| | ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23275870 |
aaaaactactgtctataacgacttattgaagcttatttccaatgccataaaagaagaactaaaacttatttccattctactttaatttggaggagggaag |
23275969 |
T |
|
| Q |
177 |
aaaatggcatcagcggtcctctttgaacggaagagtttctcaacttccggatctacattgaaagcagcctgcagaactgtgggtgacagtgccttc |
272 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
23275970 |
aaaatggcatcagcagtcctctttgaacggaagagcttctcaacttctggatcaacattgaaagcagcctgcagaactgtaggtgatagtgccttc |
23276065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 14 - 200
Target Start/End: Original strand, 23268369 - 23268572
Alignment:
| Q |
14 |
caaaaataaattgaggcaatcattcaacttcttttaaatccgagatagaagtgcagaaa----------------gaaagaaaaaactattatctataac |
97 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| | ||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
23268369 |
caaaaataaattgaggcaatcattcaatttcttttaaatccaaaatagaagtgtagaaacttaataaagtagaaagaaagaaaaaactattatctataac |
23268468 |
T |
|
| Q |
98 |
ggcttactaaagcttatttccaatgccattaaaaatactaaga-cttatttccattctactttaatttggaggagggaagaaaatggcatcagcggtcct |
196 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23268469 |
ggcttagtaaagcttatttgcaatgccattaaaaaaactaaaaacttatttccattctactttaatttggaggagggaagaaaatggcatcagcggtcct |
23268568 |
T |
|
| Q |
197 |
cttt |
200 |
Q |
| |
|
|||| |
|
|
| T |
23268569 |
cttt |
23268572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 79 - 272
Target Start/End: Complemental strand, 11137008 - 11136817
Alignment:
| Q |
79 |
aaaaactattatctataacggcttactaaagcttatttccaatgccattaaaaatactaagacttatttccattctactttaatttggaggagggaagaa |
178 |
Q |
| |
|
|||||||||| ||||||||||||| |||| | ||||| || |||||| ||||||| || ||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
11137008 |
aaaaactattgtctataacggcttgttaaaacatattttcattgccataaaaaata--aaaacttaattccattctacttcaatttggaggagggaagaa |
11136911 |
T |
|
| Q |
179 |
aatggcatcagcggtcctctttgaacggaagagtttctcaacttccggatctacattgaaagcagcctgcagaactgtgggtgacagtgccttc |
272 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||| ||||| |||||||||||||| || |||||||| ||||| || |||||| |
|
|
| T |
11136910 |
aatggcatcggcagtcctctttgaacggaagagtttctcaacttctggatcgacattgaaagcagcttgtagaactgtaggtgatagcgccttc |
11136817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 141 - 253
Target Start/End: Original strand, 27542695 - 27542807
Alignment:
| Q |
141 |
cttatttccattctactttaatttggaggagggaagaaaatggcatcagcggtcctctttgaacggaagagtttctcaacttccggatctacattgaaag |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
27542695 |
cttatttccattctactttaatttggaggagggaagaaaatggcatcagcagtcctctttgaacggaagagcttctcaacttctggatctacattgaaag |
27542794 |
T |
|
| Q |
241 |
cagcctgcagaac |
253 |
Q |
| |
|
||||||||||||| |
|
|
| T |
27542795 |
cagcctgcagaac |
27542807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 150 - 272
Target Start/End: Original strand, 8985282 - 8985404
Alignment:
| Q |
150 |
attctactttaatttggaggagggaagaaaatggcatcagcggtcctctttgaacggaagagtttctcaacttccggatctacattgaaagcagcctgca |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
8985282 |
attctactttaatttggaggagggaagaaaatggcatcagcagtcctctttgaacggaagagcttctcaacttctggatctacattgaaagcagtctgca |
8985381 |
T |
|
| Q |
250 |
gaactgtgggtgacagtgccttc |
272 |
Q |
| |
|
||||| | ||||| || |||||| |
|
|
| T |
8985382 |
gaactctaggtgatagggccttc |
8985404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 8984660 - 8984700
Alignment:
| Q |
79 |
aaaaactattatctataacggcttactaaagcttatttcca |
119 |
Q |
| |
|
|||||||||| |||||||||||||| | ||||||||||||| |
|
|
| T |
8984660 |
aaaaactattgtctataacggcttattgaagcttatttcca |
8984700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University