View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17748_low_14 (Length: 287)
Name: NF17748_low_14
Description: NF17748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17748_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-150; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 3 - 278
Target Start/End: Complemental strand, 5994964 - 5994689
Alignment:
| Q |
3 |
tggggttgggcaccacagcttttgatacttgagaatcatgcaattggagggttagtgagtcattgtggttggaacactgttgttgaaagtgtgaatgttg |
102 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5994964 |
tggggatgggcaccacagcttttgatacttgagaatcatgcaattggagggttagtgagtcattgtggttggaacactgttgttgaaagtgtgaatgttg |
5994865 |
T |
|
| Q |
103 |
ggttaccaacagtgacatggcctttatttgctgaacattttttcaatgagaaacttgtagttgatgtgttgaaaattggtgttcctgtgggagctaaaga |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5994864 |
ggttaccaacagtgacatggcctttatttgctgaacattttttcaatgagaaacttgtagttgatgtgttgaaaattggtgttcctgtgggagctaaaga |
5994765 |
T |
|
| Q |
203 |
atggaggaactggaatgagtttgggagtgaggttgtgaaaagggaagatattgggaatgctattaggttgatgatg |
278 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5994764 |
atggaggaattggaatgagtttgggagtgaggttgtgaaaagggaagatattgggaatgctattaggttgatgatg |
5994689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 17572577 - 17572312
Alignment:
| Q |
1 |
tatggggttgggcaccacagcttttgatacttgagaatcatgcaattggagggttagtgagtcattgtggttggaacactgttgttgaaagtgtgaatgt |
100 |
Q |
| |
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||||||||||||| || || | || ||||||||||| | || |||||||| | |||||||||||||||||||| || | |||||||| ||||||| |
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| T |
17572577 |
tatggggttgggctccccaattgttaatacttgagaacaaagctattggaggaatggtgagtcattgtggttggaatacaatagttgaaagcatgaatgt |
17572478 |
T |
|
| Q |
101 |
tgggttaccaacagtgacatggcctttatttgctgaacattttttcaatgagaaacttgtagttgatgtgttgaaaattggtgttcctgtgggagctaaa |
200 |
Q |
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||| || || | ||||| |||||||| ||||||||||||||||| |||||||| | || ||||||||||||| |||||| || |||| || || ||| |
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| T |
17572477 |
tggtttgcctatggtgacttggcctttgtttgctgaacatttttttaatgagaagttggttgttgatgtgttgagaattggggtatctgttggggccaaa |
17572378 |
T |
|
| Q |
201 |
gaatggaggaactggaatgagtttgggagtgaggttgtgaaaagggaagatattgggaatgctatt |
266 |
Q |
| |
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|||||||| || |||||||||||||||||||||||||||||||||||||| ||||| || |||||| |
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| T |
17572377 |
gaatggagaaattggaatgagtttgggagtgaggttgtgaaaagggaagaaattggaaaggctatt |
17572312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 17620141 - 17620395
Alignment:
| Q |
1 |
tatggggttgggcaccacagcttttgatacttgagaatcatgcaattggagggttagtgagtcattgtggttggaacactgttgttgaaagtgtgaatgt |
100 |
Q |
| |
|
||||||||||||| ||||| | ||||||||||| ||| | || |||||||| | |||| |||||||||||||| ||| | | ||||| | || || |
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| T |
17620141 |
tatggggttgggccccacaaatgttgatacttgaaaataaagctattggaggaattgtgactcattgtggttggagcacaataatggaaagcattaaagt |
17620240 |
T |
|
| Q |
101 |
tgggttaccaacagtgacatggcctttatttgctgaacattttttcaatgagaaacttgtagttgatgtgttgaaaattggtgttcctgtgggagctaaa |
200 |
Q |
| |
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||||||||| | |||| |||||||| |||||||| || ||||| |||||||| || | |||||||||||| |||||| ||| |||| || |||||| |
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| T |
17620241 |
tgggttacctatggtgagttggcctttgtttgctgatcaattttttaatgagaagattattattgatgtgttgagaattggggtttctgttggggctaaa |
17620340 |
T |
|
| Q |
201 |
gaatggaggaactggaatgagtttgggagtgaggttgtgaaaagggaagatattg |
255 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
17620341 |
gaatggagaaattggaatgagtttgggagtgaggttgtgaaaagggaagaaattg |
17620395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 14710174 - 14709909
Alignment:
| Q |
1 |
tatggggttgggcaccacagcttttgatacttgagaatcatgcaattggagggttagtgagtcattgtggttggaacactgttgttgaaagtgtgaatgt |
100 |
Q |
| |
|
||||||||||||||||||| | ||||||||||| ||| | || |||||||| | |||| |||||||||||||| ||| | | ||||| | || || |
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| T |
14710174 |
tatggggttgggcaccacaaatgttgatacttgaaaataaagctattggaggaattgtgactcattgtggttggagcacaataatggaaagcattaaagt |
14710075 |
T |
|
| Q |
101 |
tgggttaccaacagtgacatggcctttatttgctgaacattttttcaatgagaaacttgtagttgatgtgttgaaaattggtgttcctgtgggagctaaa |
200 |
Q |
| |
|
||||||| | | |||| |||||||| |||||||| || ||||| |||||||| || | |||||||||||| |||||| || |||| || |||||| |
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| T |
14710074 |
tgggttatctatggtgagttggcctttgtttgctgatcaattttttaatgagaagattattattgatgtgttgagaattggggtgtctgttggggctaaa |
14709975 |
T |
|
| Q |
201 |
gaatggaggaactggaatgagtttgggagtgaggttgtgaaaagggaagatattgggaatgctatt |
266 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||| ||||| || |||||| |
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| T |
14709974 |
gaatggagaaattggaatgagtttgggagtgaggttgtgaaaagggaagaaattggaaaggctatt |
14709909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 12613653 - 12613833
Alignment:
| Q |
1 |
tatggggttgggcaccacagcttttgatacttgagaatcatgcaattggagggttagtgagtcattgtggttggaacactgttgttgaaagtgtgaatgt |
100 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||| | || |||||||| | |||| |||||||||||||||||| || ||||||||| ||||||| |
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| T |
12613653 |
tatggggttgggcaccacaattgttgatacttgagaacaaagctattggaggaattgtgactcattgtggttggaacacagtagttgaaagtttgaatgt |
12613752 |
T |
|
| Q |
101 |
tgggttaccaacagtgacatggcctttatttgctgaacattttttcaatgagaaacttgtagttgatgtgttgaaaattgg |
181 |
Q |
| |
|
|||||| || | ||||| |||||||||||||||||||| ||||| |||||||| | || ||||| ||||| |||||||| |
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|
| T |
12613753 |
tgggttgcctatggtgacttggcctttatttgctgaacaattttttcatgagaaattggtggttgaagtgttaaaaattgg |
12613833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 16908719 - 16908467
Alignment:
| Q |
1 |
tatggggttgggcaccacagcttttgatacttgagaatcatgcaattggagggttagtgagtcattgtggttggaacactgttgttgaaagtgtgaatgt |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||| || |||| |||||| | |||| ||||||||| ||||||||| || | |||||||| |||| |
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| T |
16908719 |
tatggggttgggcaccacagcttctgatactagagcatggtgcagttggagctgttgtgactcattgtgggtggaacactattatggaaagtgtaaatgc |
16908620 |
T |
|
| Q |
101 |
tgggttaccaacagtgacatggcctttatttgctgaacattttttcaatgagaaacttgtagttgatgtgttgaaaattggtgttcctgtgggagctaaa |
200 |
Q |
| |
|
|| |||||| | || ||||| || ||||||||||| ||||||||||||| | | | |||||||||||||| |||||||| | || ||||| ||| |
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|
| T |
16908619 |
aggtttaccattggctacttggccattgtttgctgaacagtttttcaatgagagattgttggttgatgtgttgaagattggtgtggcagttggagcaaaa |
16908520 |
T |
|
| Q |
201 |
gaatggaggaactggaatgagtttgggagtgaggttgtgaaaagggaagatat |
253 |
Q |
| |
|
|||||||| || ||||||||||||||| ||| || ||||| ||||| ||||| |
|
|
| T |
16908519 |
gaatggagaaattggaatgagtttggggatgatgtggtgaagagggaggatat |
16908467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 76
Target Start/End: Complemental strand, 10201935 - 10201902
Alignment:
| Q |
43 |
caattggagggttagtgagtcattgtggttggaa |
76 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
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|
| T |
10201935 |
caattggagggtttgtgagtcattgtggttggaa |
10201902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 76
Target Start/End: Complemental strand, 10209008 - 10208975
Alignment:
| Q |
43 |
caattggagggttagtgagtcattgtggttggaa |
76 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
|
|
| T |
10209008 |
caattggagggtttgtgagtcattgtggttggaa |
10208975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 120 - 227
Target Start/End: Original strand, 14870059 - 14870166
Alignment:
| Q |
120 |
tggcctttatttgctgaacattttttcaatgagaaacttgtagttgatgtgttgaaaattggtgttcctgtgggagctaaagaatggaggaactggaatg |
219 |
Q |
| |
|
||||| || ||||||||||| ||||||||||||| | | | |||||||||||||| |||||||| | || ||||| || |||||||| |||||||||| |
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| T |
14870059 |
tggccattgtttgctgaacagtttttcaatgagagattgttggttgatgtgttgaagattggtgtggcagttggagcaaaggaatggagaaactggaatg |
14870158 |
T |
|
| Q |
220 |
agtttggg |
227 |
Q |
| |
|
|||||||| |
|
|
| T |
14870159 |
agtttggg |
14870166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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