View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17748_low_15 (Length: 283)

Name: NF17748_low_15
Description: NF17748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17748_low_15
NF17748_low_15
[»] scaffold0076 (2 HSPs)
scaffold0076 (98-265)||(49737-49904)
scaffold0076 (98-265)||(36731-36898)
[»] chr3 (5 HSPs)
chr3 (98-265)||(12206802-12206969)
chr3 (98-265)||(12209214-12209381)
chr3 (13-98)||(14436916-14437001)
chr3 (98-228)||(10813364-10813495)
chr3 (134-223)||(14429723-14429812)
[»] chr7 (4 HSPs)
chr7 (98-263)||(30096530-30096695)
chr7 (100-264)||(6201787-6201951)
chr7 (98-264)||(6198523-6198677)
chr7 (98-223)||(9214724-9214849)
[»] scaffold0013 (3 HSPs)
scaffold0013 (98-265)||(133592-133759)
scaffold0013 (98-265)||(138121-138288)
scaffold0013 (98-265)||(147517-147684)
[»] chr4 (7 HSPs)
chr4 (98-265)||(7202894-7203061)
chr4 (98-265)||(20494443-20494600)
chr4 (105-265)||(20503071-20503221)
chr4 (100-265)||(28924817-28924982)
chr4 (98-265)||(28926917-28927084)
chr4 (98-240)||(27788686-27788829)
chr4 (98-209)||(23881787-23881899)
[»] scaffold0009 (1 HSPs)
scaffold0009 (98-265)||(96362-96530)
[»] chr8 (16 HSPs)
chr8 (98-265)||(36598199-36598367)
chr8 (121-265)||(753212-753356)
chr8 (98-265)||(36602391-36602559)
chr8 (97-229)||(2496-2628)
chr8 (98-240)||(31710762-31710905)
chr8 (98-261)||(32231606-32231768)
chr8 (98-264)||(17007644-17007810)
chr8 (98-264)||(17541140-17541306)
chr8 (98-210)||(21938265-21938378)
chr8 (98-166)||(44754043-44754111)
chr8 (98-155)||(17526809-17526866)
chr8 (213-264)||(17526721-17526772)
chr8 (101-155)||(16083690-16083744)
chr8 (101-155)||(16085097-16085151)
chr8 (101-155)||(16086504-16086558)
chr8 (101-155)||(16087911-16087965)
[»] chr5 (5 HSPs)
chr5 (97-261)||(37257120-37257283)
chr5 (98-264)||(15212959-15213125)
chr5 (98-210)||(40936254-40936367)
chr5 (97-234)||(32965411-32965548)
chr5 (101-155)||(20675620-20675674)
[»] scaffold0888 (1 HSPs)
scaffold0888 (98-265)||(3926-4094)
[»] scaffold1555 (1 HSPs)
scaffold1555 (98-231)||(1204-1337)
[»] chr2 (3 HSPs)
chr2 (98-240)||(4876422-4876565)
chr2 (98-210)||(23696175-23696288)
chr2 (101-155)||(26383837-26383891)
[»] chr6 (3 HSPs)
chr6 (98-216)||(13728047-13728166)
chr6 (98-210)||(17997211-17997324)
chr6 (98-171)||(22467182-22467255)
[»] scaffold0320 (1 HSPs)
scaffold0320 (140-240)||(11712-11813)
[»] scaffold0037 (1 HSPs)
scaffold0037 (98-210)||(20903-21016)
[»] chr1 (1 HSPs)
chr1 (147-240)||(24277465-24277559)
[»] scaffold0179 (1 HSPs)
scaffold0179 (101-210)||(27153-27263)
[»] scaffold0369 (1 HSPs)
scaffold0369 (97-146)||(7187-7236)
[»] scaffold0878 (1 HSPs)
scaffold0878 (98-146)||(1467-1515)
[»] scaffold0438 (1 HSPs)
scaffold0438 (176-252)||(4012-4088)
[»] scaffold0001 (2 HSPs)
scaffold0001 (100-139)||(30188-30227)
scaffold0001 (100-139)||(35495-35534)


Alignment Details
Target: scaffold0076 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 98 - 265
Target Start/End: Original strand, 49737 - 49904
Alignment:
Q  98 tggaccgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgcccttcgtaagggcctaaaagccttccagaagggttattgggttta 197  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  49737 tggaccgtcataatattcctcaaagcttagaagccctctagaaggacttaaacgccctccgtaagggcctaaaagccttccagaagggttattgggttta 49836  T
Q  198 ggcgcgccctcctaaaggatgccgccctccttaacctccagaagcttctagaaactgcctaaaatact 265  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  49837 ggcgcgccctcctaaaggatgccgccctgcttaacctccagaagcttctagaaaccgcctaaaatact 49904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 98 - 265
Target Start/End: Original strand, 36731 - 36898
Alignment:
Q  98 tggaccgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgcccttcgtaagggcctaaaagccttccagaagggttattgggttta 197  Q
    |||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  36731 tggaccgtcataatattcctcaaaacttagaagccatctagaaggacttaaacgccctccgtaagggcctaaaagccttccagaagggttattgggctta 36830  T
Q  198 ggcgcgccctcctaaaggatgccgccctccttaacctccagaagcttctagaaactgcctaaaatact 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  36831 ggcgcgccctcctaaaggatgccgccctccttaacctccagaagcttctagaaaccacctaaaatact 36898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 136; Significance: 5e-71; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 98 - 265
Target Start/End: Complemental strand, 12206969 - 12206802
Alignment:
Q  98 tggaccgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgcccttcgtaagggcctaaaagccttccagaagggttattgggttta 197  Q
    |||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  12206969 tggaccgtcataatattcctcaaagcttagaagcactctagaagtacttaaacgccctccgtaagggcctaaaagccttccagaagggttattgggttta 12206870  T
Q  198 ggcgcgccctcctaaaggatgccgccctccttaacctccagaagcttctagaaactgcctaaaatact 265  Q
    ||| ||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||    
T  12206869 ggcccgccctcctaaaggatgccgccctccttaacttccagaagcttctataaaccgcctaaaatact 12206802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 98 - 265
Target Start/End: Complemental strand, 12209381 - 12209214
Alignment:
Q  98 tggaccgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgcccttcgtaagggcctaaaagccttccagaagggttattgggttta 197  Q
    ||||||||||||||||||||||||||||  |||| || ||||||||||||||||||||  |||||||||||||||| || ||||||||||||||||||||    
T  12209381 tggaccgtcataatattcctcaaagcttataagcactttagaaggacttaaacgccctctgtaagggcctaaaagcttttcagaagggttattgggttta 12209282  T
Q  198 ggcgcgccctcctaaaggatgccgccctccttaacctccagaagcttctagaaactgcctaaaatact 265  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||    
T  12209281 ggcgcgccttcctaaaggatgccgccctccttaacctcaagaagcttctataaaccgcctaaaatact 12209214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 14437001 - 14436916
Alignment:
Q  13 cagatacaaaacaaccacactgaaaaaccaaggatctaacatatgcataaatcaatacatacatgtttgttatattcaagggagct 98  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  14437001 cagatacaaaacaaccacactaaaaaatcaaggatctaacatatgcataaatcaatacatatatgtttattatattcaagggagct 14436916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 98 - 228
Target Start/End: Complemental strand, 10813495 - 10813364
Alignment:
Q  98 tggaccgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgcccttcgtaagggcctaaaagcctt-ccagaagggttattgggttt 196  Q
    |||||| | ||||||||| ||||||||| | | || ||  ||||| |||||||||||||||||||| |||||||| ||| ||  ||||||||||||||||    
T  10813495 tggaccattataatattcttcaaagcttaggaaccttcaggaaggtcttaaacgcccttcgtaaggacctaaaaggctttcctaaagggttattgggttt 10813396  T
Q  197 aggcgcgccctcctaaaggatgccgccctcct 228  Q
    |||||||||||||||||||||| |||||||||    
T  10813395 aggcgcgccctcctaaaggatgtcgccctcct 10813364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 223
Target Start/End: Original strand, 14429723 - 14429812
Alignment:
Q  134 tctagaaggacttaaacgcccttcgtaagggcctaaaagccttccagaagggttattgggtttaggcgcgccctcctaaaggatgccgcc 223  Q
    |||||||||||| ||||||||| || | ||||||| |  || ||||||||| |  ||||| ||||||||  |||||| ||||||||||||    
T  14429723 tctagaaggactgaaacgccctccggacgggcctagagaccctccagaaggctccttgggcttaggcgcatcctcctgaaggatgccgcc 14429812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 98 - 263
Target Start/End: Original strand, 30096530 - 30096695
Alignment:
Q  98 tggaccgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgcccttcgtaagggcctaaaagccttccagaagggttattgggttta 197  Q
    |||||||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  30096530 tggaccgtcataatattcctcaaagcttagaagccctcgggaaggacttaaacgcccttcgtaagggcctaaaggccttccagaagggttattgggttta 30096629  T
Q  198 ggcgcgccctcctaaaggatgccgccctccttaacctccagaagcttctagaaactgcctaaaata 263  Q
    | ||| |||| |||||||| ||||||||| | ||||||||||||||||||||||| ||||||||||    
T  30096630 gacgcacccttctaaaggaagccgccctcttgaacctccagaagcttctagaaaccgcctaaaata 30096695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 100 - 264
Target Start/End: Original strand, 6201787 - 6201951
Alignment:
Q  100 gaccgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgcccttcgtaagggcctaaaagccttccagaagggttattgggtttagg 199  Q
    |||| ||||||||||| | || |||| ||||||||||||||||||||||||||||| || ||||||| | | ||| ||||||||||||||||||||||||    
T  6201787 gaccttcataatattctttaaggcttagaagccctctagaaggacttaaacgccctccgaaagggcccagaggccctccagaagggttattgggtttagg 6201886  T
Q  200 cgcgccctcctaaaggatgccgccctccttaacctccagaagcttctagaaactgcctaaaatac 264  Q
    |||| |||||| |||||||||||| |||||| ||||||  ||||||||||||| |||||||||||    
T  6201887 cgcgtcctcctgaaggatgccgccttccttagcctccaagagcttctagaaaccgcctaaaatac 6201951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 98 - 264
Target Start/End: Original strand, 6198523 - 6198677
Alignment:
Q  98 tggaccgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgcccttcgtaagggcctaaaagccttccagaagggttattgggttta 197  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| || ||||        ||| ||||||||||||||||||||||    
T  6198523 tggaccgtcataatattcctcaaggcttagaagccctctagaaggacttaaacgccctccggaagg--------gccctccagaagggttattgggttta 6198614  T
Q  198 ggcgcgccctcctaaaggatgccgccctccttaacctccagaagcttctagaaactgcctaaaatac 264  Q
    |||||| ||||||    ||||||||| |||||| ||||||| ||||||| ||||| |||||||||||    
T  6198615 ggcgcgtcctcct----gatgccgccttccttagcctccaggagcttctggaaaccgcctaaaatac 6198677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 98 - 223
Target Start/End: Complemental strand, 9214849 - 9214724
Alignment:
Q  98 tggaccgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgcccttcgtaagggcctaaaagccttccagaagggttattgggttta 197  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||| || | ||||| |||  || ||||||||| |  ||||| |||    
T  9214849 tggaccgtcataatattcctcaaggcttagaagccctctagaaggactcaaacgccctccggacgggcccaaagaccctccagaaggctccttgggctta 9214750  T
Q  198 ggcgcgccctcctaaaggatgccgcc 223  Q
    |||||| |||||| ||||||||||||    
T  9214749 ggcgcgtcctcctgaaggatgccgcc 9214724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 98 - 265
Target Start/End: Complemental strand, 133759 - 133592
Alignment:
Q  98 tggaccgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgcccttcgtaagggcctaaaagccttccagaagggttattgggttta 197  Q
    |||||||||||||||||||||||||||| |||||| | | |||||||||||| ||| | |||||||||||| | |||||||||||||||||||||| |||    
T  133759 tggaccgtcataatattcctcaaagcttagaagccttatggaaggacttaaatgccttccgtaagggcctagaggccttccagaagggttattgggctta 133660  T
Q  198 ggcgcgccctcctaaaggatgccgccctccttaacctccagaagcttctagaaactgcctaaaatact 265  Q
    |||||| ||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  133659 ggcgcgtcctcctaaaagatgccgccctccttaacctccagaaacttctagaaaccgcctaaaatact 133592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 98 - 265
Target Start/End: Complemental strand, 138288 - 138121
Alignment:
Q  98 tggaccgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgcccttcgtaagggcctaaaagccttccagaagggttattgggttta 197  Q
    |||||||||||||||||||||||||||| |||||| | | |||||||||||| ||| | |||||||||||| | |||||||||||||||||||||| |||    
T  138288 tggaccgtcataatattcctcaaagcttagaagccttatggaaggacttaaatgccttccgtaagggcctagaggccttccagaagggttattgggctta 138189  T
Q  198 ggcgcgccctcctaaaggatgccgccctccttaacctccagaagcttctagaaactgcctaaaatact 265  Q
    |||||| ||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  138188 ggcgcgtcctcctaaaagatgccgccctccttaacctccagaaacttctagaaaccgcctaaaatact 138121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 98 - 265
Target Start/End: Complemental strand, 147684 - 147517
Alignment:
Q  98 tggaccgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgcccttcgtaagggcctaaaagccttccagaagggttattgggttta 197  Q
    |||||||||||||||||||||||||||| |||||| | | |||||||||||||||||| |||||||||||| | ||||||||||||||||||||||  ||    
T  147684 tggaccgtcataatattcctcaaagcttagaagccttatggaaggacttaaacgccctccgtaagggcctagaggccttccagaagggttattgggcata 147585  T
Q  198 ggcgcgccctcctaaaggatgccgccctccttaacctccagaagcttctagaaactgcctaaaatact 265  Q
    || ||| ||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  147584 ggtgcgtcctcctaaaagatgccgccctccttaacctccagaaacttctagaaaccgcctaaaatact 147517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 98 - 265
Target Start/End: Complemental strand, 7203061 - 7202894
Alignment:
Q  98 tggaccgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgcccttcgtaagggcctaaaagccttccagaagggttattgggttta 197  Q
    |||||||||||||||||||| ||||||| |||||||||  |||||||||||||||||||||||||| |||||| ||| ||||||||||||   |||||||    
T  7203061 tggaccgtcataatattcctaaaagcttagaagccctcgggaaggacttaaacgcccttcgtaaggacctaaaggccatccagaagggtttaagggttta 7202962  T
Q  198 ggcgcgccctcctaaaggatgccgccctccttaacctccagaagcttctagaaactgcctaaaatact 265  Q
    |||| |||||||||||||| ||| ||||||| ||||||||||||||||||||||||||| ||||||||    
T  7202961 ggcgtgccctcctaaaggaagcctccctcctgaacctccagaagcttctagaaactgcccaaaatact 7202894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 98 - 265
Target Start/End: Original strand, 20494443 - 20494600
Alignment:
Q  98 tggaccgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgcccttcgtaagggcctaaaagccttccagaagggttattgggttta 197  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||          ||||||||| | ||||||||||||||||||||||||||    
T  20494443 tggaccgtcataatattcctcaaagcttagaagccctctagaaggacttaaa----------aagggcctagaggccttccagaagggttattgggttta 20494532  T
Q  198 ggcgcgccctcctaaaggatgccgccctccttaacctccagaagcttctagaaactgcctaaaatact 265  Q
    |||||  ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  20494533 ggcgcatcctcctaaaagatgccgccctccttaacctccagaagcttctagaaaccgcctaaaatact 20494600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 105 - 265
Target Start/End: Original strand, 20503071 - 20503221
Alignment:
Q  105 tcataatattcctcaaagctttgaagccctctagaaggacttaaacgcccttcgtaagggcctaaaagccttccagaagggttattgggtttaggcgcgc 204  Q
    ||||||||||||||||||||| |||||||||||||||||||||||          ||||||||| | |||||||||||||||||||||||||||||||      
T  20503071 tcataatattcctcaaagcttagaagccctctagaaggacttaaa----------aagggcctagaggccttccagaagggttattgggtttaggcgcat 20503160  T
Q  205 cctcctaaaggatgccgccctccttaacctccagaagcttctagaaactgcctaaaatact 265  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||    
T  20503161 cctcctaaaggatgccgccctccttaacctcccgaagcttctagaatccgcctaaaatact 20503221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 100 - 265
Target Start/End: Complemental strand, 28924982 - 28924817
Alignment:
Q  100 gaccgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgcccttcgtaagggcctaaaagccttccagaagggttattgggtttagg 199  Q
    ||||||||||||||||||||| |||| ||| |||||||||||||||| || ||||| || ||||||  | | ||| |||||||||||||||||| |||||    
T  28924982 gaccgtcataatattcctcaaggcttagaaaccctctagaaggacttgaatgccctccggaagggctcagaggccctccagaagggttattggggttagg 28924883  T
Q  200 cgcgccctcctaaaggatgccgccctccttaacctccagaagcttctagaaactgcctaaaatact 265  Q
    | || |||||| ||||||| |||| |||||||||||||||||||||| ||||| ||||||||||||    
T  28924882 cacgtcctcctgaaggatgtcgccttccttaacctccagaagcttctggaaaccgcctaaaatact 28924817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 98 - 265
Target Start/End: Complemental strand, 28927084 - 28926917
Alignment:
Q  98 tggaccgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgcccttcgtaagggcctaaaagccttccagaagggttattgggttta 197  Q
    |||||| |||||||||||||||| |||| ||| |||||| ||| ||||| ||||||||  | ||||||  | |  || |||||||||||||||||| |||    
T  28927084 tggaccatcataatattcctcaaggcttagaaaccctctggaatgacttgaacgccctctggaagggctcagagaccctccagaagggttattggggtta 28926985  T
Q  198 ggcgcgccctcctaaaggatgccgccctccttaacctccagaagcttctagaaactgcctaaaatact 265  Q
    ||| || |||||| |||||||  ||| |||||| ||||||||||||||| ||||| ||||||||||||    
T  28926984 ggcacgtcctcctgaaggatgaggccttccttagcctccagaagcttctggaaaccgcctaaaatact 28926917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 98 - 240
Target Start/End: Original strand, 27788686 - 27788829
Alignment:
Q  98 tggaccgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgcccttcgtaagggcctaaaagccttc-cagaagggttattgggttt 196  Q
    |||||||||||||| ||| ||||||||| ||| || ||   || | |||||||||||||||||||| ||||||||  ||  || ||||||||||||||||    
T  27788686 tggaccgtcataatgttcttcaaagcttagaaaccatcggaaaagtcttaaacgcccttcgtaaggacctaaaaggttttacaaaagggttattgggttt 27788785  T
Q  197 aggcgcgccctcctaaaggatgccgccctccttaacctccagaa 240  Q
    |||||||||||||||||||| | ||||||||| ||||| |||||    
T  27788786 aggcgcgccctcctaaaggacgtcgccctcctgaaccttcagaa 27788829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 98 - 209
Target Start/End: Original strand, 23881787 - 23881899
Alignment:
Q  98 tggaccgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgcccttcgtaagggcctaaaa-gccttccagaagggttattgggttt 196  Q
    ||||||||| |||||||| ||||||||| ||| |||||   |||| |||||| ||||||||||||| ||||||| |  ||||| |||||||| |||||||    
T  23881787 tggaccgtcctaatattcttcaaagcttggaaaccctcggaaaggtcttaaatgcccttcgtaaggacctaaaaggttttccaaaagggttactgggttt 23881886  T
Q  197 aggcgcgccctcc 209  Q
    |||||| ||||||    
T  23881887 aggcgccccctcc 23881899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 98 - 265
Target Start/End: Complemental strand, 96530 - 96362
Alignment:
Q  98 tggaccgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgcccttcgtaagggcctaaaagccttccagaagggttattgggttta 197  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||| ||||| | |||| | |||||||||| |||||||||  ||||    
T  96530 tggaccgtcataatattcctcaaagcttagaagccctctggaaggacttaaacaccctccgtaaagacctagaggccttccagaggggttattgaattta 96431  T
Q  198 ggcgcgccctcctaaaggatgccgccctcctt-aacctccagaagcttctagaaactgcctaaaatact 265  Q
    |||||  |||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||    
T  96430 ggcgcatcctcctaaaggatgccgccctctttaaacctccagaagcttctagaaaccgcctaaaatact 96362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 4e-50; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 98 - 265
Target Start/End: Original strand, 36598199 - 36598367
Alignment:
Q  98 tggaccgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgcccttcgtaagggcctaaaagccttccagaagggttattgggttta 197  Q
    ||||||||||||||||||||  |||||| |||||||| | ||||||||||||| |||| ||||||| |||| | |||||||||| |||||||||| ||||    
T  36598199 tggaccgtcataatattcctataagcttagaagccctatggaaggacttaaacaccctccgtaaggacctagaggccttccagaggggttattggattta 36598298  T
Q  198 ggcgcgccctcctaaaggatgccgccctcctt-aacctccagaagcttctagaaactgcctaaaatact 265  Q
    |||||| |||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||    
T  36598299 ggcgcgtcctcctaaaggatgccgccctctttaaacctccagaagcttctagaaaccgcctaaaatact 36598367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 121 - 265
Target Start/End: Original strand, 753212 - 753356
Alignment:
Q  121 agctttgaagccctctagaaggacttaaacgcccttcgtaagggcctaaaagccttccagaagggttattgggtttaggcgcgccctcctaaaggatgcc 220  Q
    ||||| |||||| | | |||||||||||||||||| |||||||||||| | |||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  753212 agcttagaagccttatggaaggacttaaacgccctccgtaagggcctagaggccttccagaagggttattgggcttaggcgcgtcctcctaaaggatgcc 753311  T
Q  221 gccctccttaacctccagaagcttctagaaactgcctaaaatact 265  Q
    |||||||||||||||||||| |||||||||||  |||||||||||    
T  753312 gccctccttaacctccagaaacttctagaaaccacctaaaatact 753356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 98 - 265
Target Start/End: Original strand, 36602391 - 36602559
Alignment:
Q  98 tggaccgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgcccttcgtaagggcctaaaagccttccagaagggttattgggttta 197  Q
    ||||||||||||||||||||  |||||| |||||||| | || |||||||||| |||| ||||||| |||| | ||||||||||  ||||||||| ||||    
T  36602391 tggaccgtcataatattcctataagcttagaagccctatggatggacttaaacaccctccgtaaggacctagaggccttccagagaggttattggattta 36602490  T
Q  198 ggcgcgccctcctaaaggatgccgccctcctt-aacctccagaagcttctagaaactgcctaaaatact 265  Q
    |||||| |||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||    
T  36602491 ggcgcgtcctcctaaaggatgccgccctctttaaacctccagaagcttctagaaaccgcctaaaatact 36602559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 97 - 229
Target Start/End: Complemental strand, 2628 - 2496
Alignment:
Q  97 ctggaccgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgcccttcgtaagggcctaaaagccttccagaagggttattgggttt 196  Q
    ||||||||||||||||||||||||||||| |||||| | | ||| ||||||||||||||  ||||||||||| | ||| |||||||||||||||||| ||    
T  2628 ctggaccgtcataatattcctcaaagcttagaagccttatggaatgacttaaacgccctctgtaagggcctagaggccctccagaagggttattgggctt 2529  T
Q  197 aggcgcgccctcctaaaggatgccgccctcctt 229  Q
    ||||||| |||||||||||||||||||||||||    
T  2528 aggcgcgtcctcctaaaggatgccgccctcctt 2496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 98 - 240
Target Start/End: Original strand, 31710762 - 31710905
Alignment:
Q  98 tggaccgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgcccttcgtaagggcctaaaa-gccttccagaagggttattgggttt 196  Q
    |||||||||||||||||| ||||||||| ||| ||||| | |||| |||||||||||||| ||||| ||||||| |  ||| | ||||| ||||||||||    
T  31710762 tggaccgtcataatattcttcaaagcttagaaaccctcgaaaaggtcttaaacgcccttcctaaggacctaaaaggttttcaaaaagggctattgggttt 31710861  T
Q  197 aggcgcgccctcctaaaggatgccgccctccttaacctccagaa 240  Q
    |||||||||||||||||||| | ||||||||| ||||| |||||    
T  31710862 aggcgcgccctcctaaaggacgtcgccctcctgaaccttcagaa 31710905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 98 - 261
Target Start/End: Complemental strand, 32231768 - 32231606
Alignment:
Q  98 tggaccgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgcccttcgtaagggcctaaaagccttccagaagggttattgggttta 197  Q
    |||||||||||||||||||||||  ||  ||||||||||||||| ||||||||||||| || ||||||| | | | | | | ||||||||||||| | ||    
T  32231768 tggaccgtcataatattcctcaagactcggaagccctctagaagaacttaaacgccctccgaaagggcccataggtccttcggaagggttattggatata 32231669  T
Q  198 ggcgcgccctcctaaaggatgccgccctccttaacctccagaagcttctagaaactgcctaaaa 261  Q
    |||||| ||| |||||||||  |||||  ||||||| |||||||||||| ||| | ||||||||    
T  32231668 ggcgcgaccttctaaaggatatcgcccatcttaacc-ccagaagcttctggaagccgcctaaaa 32231606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 264
Target Start/End: Original strand, 17007644 - 17007810
Alignment:
Q  98 tggaccgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgcccttcgtaagggcctaaaagccttccagaagggttatt-gggttt 196  Q
    |||||||||||||||||||| || |||| |||||||||||||||| |||| |||||||    |||||| || |  || |||||||||| ||||  |||      
T  17007644 tggaccgtcataatattcctgaaggcttagaagccctctagaagggcttatacgccctctagaagggcttagacaccctccagaagggctattaaggtcc 17007743  T
Q  197 aggcgcgccctcctaaaggatgccgccctccttaacctccagaagcttctagaaactgcctaaaatac 264  Q
    ||| ||| ||||||  |||| |||||| |||||| |||||||||||||| |||||| |||||||||||    
T  17007744 aggtgcgtcctcct-taggacgccgccttccttagcctccagaagcttccagaaaccgcctaaaatac 17007810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 264
Target Start/End: Complemental strand, 17541306 - 17541140
Alignment:
Q  98 tggaccgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgcccttcgtaagggcctaaaagccttccagaagggttatt-gggttt 196  Q
    |||||||||||||||||||| || |||| |||||||||||||||| |||| |||||||    |||||| || |  || |||||||||| ||||  |||      
T  17541306 tggaccgtcataatattcctgaaggcttagaagccctctagaagggcttatacgccctctagaagggcttagacaccctccagaagggctattaaggtcc 17541207  T
Q  197 aggcgcgccctcctaaaggatgccgccctccttaacctccagaagcttctagaaactgcctaaaatac 264  Q
    ||| ||| ||||||  |||| |||||| |||||| |||||||||||||| |||||| |||||||||||    
T  17541206 aggtgcgtcctcct-taggacgccgccttccttagcctccagaagcttccagaaaccgcctaaaatac 17541140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 98 - 210
Target Start/End: Original strand, 21938265 - 21938378
Alignment:
Q  98 tggaccgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgcccttcgtaagggcctaaaa-gccttccagaagggttattgggttt 196  Q
    |||||||||||||||||| ||||||||| ||| |||||   |||| ||||||  |||||||||||| | ||||| |  ||||| ||||||||||||||||    
T  21938265 tggaccgtcataatattcttcaaagcttagaaaccctcggaaaggtcttaaattcccttcgtaaggacataaaaggttttccaaaagggttattgggttt 21938364  T
Q  197 aggcgcgccctcct 210  Q
    |||||| |||||||    
T  21938365 aggcgccccctcct 21938378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 166
Target Start/End: Original strand, 44754043 - 44754111
Alignment:
Q  98 tggaccgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgcccttcgtaagggcc 166  Q
    ||||| ||||||||||||||||| |||  |||||| ||||||||||||||||||| || || |||||||    
T  44754043 tggactgtcataatattcctcaaggctcggaagccttctagaaggacttaaacgctctccggaagggcc 44754111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 155
Target Start/End: Complemental strand, 17526866 - 17526809
Alignment:
Q  98 tggaccgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgccct 155  Q
    |||||||||||||||||| | || |||| |||||||||||||||| |||| |||||||    
T  17526866 tggaccgtcataatattcttgaaggcttagaagccctctagaagggcttagacgccct 17526809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 264
Target Start/End: Complemental strand, 17526772 - 17526721
Alignment:
Q  213 aggatgccgccctccttaacctccagaagcttctagaaactgcctaaaatac 264  Q
    |||| |||||| |||||| |||||||||||||| |||||| |||||||||||    
T  17526772 aggacgccgccttccttagcctccagaagcttccagaaaccgcctaaaatac 17526721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 16083744 - 16083690
Alignment:
Q  101 accgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgccct 155  Q
    ||||||||||||||||| || |||| ||| |||||||||||| |||| |||||||    
T  16083744 accgtcataatattcctaaaggcttagaatccctctagaagggcttagacgccct 16083690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 16085151 - 16085097
Alignment:
Q  101 accgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgccct 155  Q
    ||||||||||||||||| || |||| ||| |||||||||||| |||| |||||||    
T  16085151 accgtcataatattcctaaaggcttagaatccctctagaagggcttagacgccct 16085097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 16086558 - 16086504
Alignment:
Q  101 accgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgccct 155  Q
    ||||||||||||||||| || |||| ||| |||||||||||| |||| |||||||    
T  16086558 accgtcataatattcctaaaggcttagaatccctctagaagggcttagacgccct 16086504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 16087965 - 16087911
Alignment:
Q  101 accgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgccct 155  Q
    ||||||||||||||||| || |||| ||| |||||||||||| |||| |||||||    
T  16087965 accgtcataatattcctaaaggcttagaatccctctagaagggcttagacgccct 16087911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 97 - 261
Target Start/End: Complemental strand, 37257283 - 37257120
Alignment:
Q  97 ctggaccgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgcccttcgtaagggcctaaaagccttccagaagggttattgggttt 196  Q
    |||||| ||||||||||| || ||| |||||||| ||||  ||||||||||||||||||||||||||||| ||| |||||| ||||||||| | ||||||    
T  37257283 ctggactgtcataatatttctaaaatctttgaagtcctcgggaaggacttaaacgcccttcgtaagggccgaaaggccttctagaagggtt-tagggttt 37257185  T
Q  197 aggcgcgccctcctaaaggatgccgccctccttaacctccagaagcttctagaaactgcctaaaa 261  Q
    |||||||||||||||||||| ||||||||| | ||||| ||||||||||||||||| ||||||||    
T  37257184 aggcgcgccctcctaaaggaagccgccctcttgaaccttcagaagcttctagaaaccgcctaaaa 37257120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 98 - 264
Target Start/End: Complemental strand, 15213125 - 15212959
Alignment:
Q  98 tggaccgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgcccttcgtaagggcctaaaagccttccagaagggttattgggttta 197  Q
    |||||||||||||||||||| || || | |||||||||||||||||||| ||| |||| || ||||||  | | ||| ||||||| |||||||| |||      
T  15213125 tggaccgtcataatattccttaaggcctagaagccctctagaaggacttgaacaccctccggaagggctcagaggccctccagaaaggttattgagttgg 15213026  T
Q  198 ggcgcgccctcctaaaggatgccgccctccttaacctccagaagcttctagaaactgcctaaaatac 264  Q
    ||||   |||| | ||| |||||||| |||||| ||||||||||||||| ||||| |||||||||||    
T  15213025 ggcgtatcctcatgaagaatgccgccttccttaccctccagaagcttctggaaaccgcctaaaatac 15212959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 98 - 210
Target Start/End: Original strand, 40936254 - 40936367
Alignment:
Q  98 tggaccgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgcccttcgtaagggcctaaaa-gccttccagaagggttattgggttt 196  Q
    ||||||| | |||||||| ||||||||| ||| |||||   |||| |||||||||||||||||||| ||||||| |  ||||| ||||||||||||||||    
T  40936254 tggaccgccgtaatattcttcaaagcttagaaaccctcggaaaggtcttaaacgcccttcgtaaggacctaaaaggttttccaaaagggttattgggttt 40936353  T
Q  197 aggcgcgccctcct 210  Q
    ||||||||||||||    
T  40936354 aggcgcgccctcct 40936367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 234
Target Start/End: Original strand, 32965411 - 32965548
Alignment:
Q  97 ctggaccgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgcccttcgtaagggcctaaaagcct-tccagaagggttattgggtt 195  Q
    ||||||| |||| |||||| ||||||||| ||  |||||   |||| |||||||||| | ||||||| ||||||||  | |||| |||| ||||||||||    
T  32965411 ctggaccatcatcatattcttcaaagcttagagaccctcggaaaggtcttaaacgccttccgtaaggacctaaaaggttctccaaaaggtttattgggtt 32965510  T
Q  196 taggcgcgccctcctaaaggatgccgccctccttaacct 234  Q
    |||||||| |||||||||| | | ||||||||| |||||    
T  32965511 taggcgcg-cctcctaaagaacgtcgccctcctgaacct 32965548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 20675674 - 20675620
Alignment:
Q  101 accgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgccct 155  Q
    ||||||||||||||||| || |||| |||||| ||||||| |||||| |||||||    
T  20675674 accgtcataatattcctaaaggcttagaagccttctagaacgacttagacgccct 20675620  T

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Target: scaffold0888 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0888
Description:

Target: scaffold0888; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 98 - 265
Target Start/End: Original strand, 3926 - 4094
Alignment:
Q  98 tggaccgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgcccttcgtaagggcctaaaagccttccagaagggttattgggttta 197  Q
    |||||||||||||||||||||||||||| |||||||||| ||||  ||| ||||| || ||||| |||||| | |||||||||||||||  |  ||||||    
T  3926 tggaccgtcataatattcctcaaagcttagaagccctctggaagtgcttgaacgcgctccgtaaaggcctagaggccttccagaagggtgttaaggttta 4025  T
Q  198 ggcgcgccctcctaaaggatgccgccctcctt-aacctccagaagcttctagaaactgcctaaaatact 265  Q
    |||||| |||||||||||||||||||||| || ||||||||||||||||||||||  ||||||| ||||    
T  4026 ggcgcgtcctcctaaaggatgccgccctctttaaacctccagaagcttctagaaatcgcctaaagtact 4094  T

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Target: scaffold1555 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold1555
Description:

Target: scaffold1555; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 98 - 231
Target Start/End: Original strand, 1204 - 1337
Alignment:
Q  98 tggaccgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgcccttcgtaagggcctaaaagccttccagaagggttattgggttta 197  Q
    ||||||||||||||||||||  |||||| |||||||| | || |||||||||| |||| ||||||| |||| | ||||||||||  ||||||||| ||||    
T  1204 tggaccgtcataatattcctataagcttagaagccctatggatggacttaaacaccctccgtaaggacctagaggccttccagagaggttattggattta 1303  T
Q  198 ggcgcgccctcctaaaggatgccgccctccttaa 231  Q
    |||||| |||||||||||||||||||||| ||||    
T  1304 ggcgcgtcctcctaaaggatgccgccctctttaa 1337  T

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Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 98 - 240
Target Start/End: Original strand, 4876422 - 4876565
Alignment:
Q  98 tggaccgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgcccttcgtaagggcctaaaa-gccttccagaagggttattgggttt 196  Q
    |||||||||||||||||| ||||||||| ||| ||||| | |||| |||||||||||||| ||||| ||||||| |  ||| | ||||| ||||||||||    
T  4876422 tggaccgtcataatattcttcaaagcttagaaaccctcgaaaaggtcttaaacgcccttcctaaggacctaaaaggttttcaaaaagggctattgggttt 4876521  T
Q  197 aggcgcgccctcctaaaggatgccgccctccttaacctccagaa 240  Q
    |||||||||||||||||||| | ||||||||| ||||| |||||    
T  4876522 aggcgcgccctcctaaaggacgtcgccctcctgaaccttcagaa 4876565  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 98 - 210
Target Start/End: Original strand, 23696175 - 23696288
Alignment:
Q  98 tggaccgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgcccttcgtaagggcctaaaa-gccttccagaagggttattgggttt 196  Q
    ||||||||||||| |||| |||||||||  || |||||   |||| ||||||| |||||||||||| ||||||| |  ||| | ||||||||||||||||    
T  23696175 tggaccgtcataacattcttcaaagcttataaaccctcggaaaggtcttaaacccccttcgtaaggacctaaaaggttttcgaaaagggttattgggttt 23696274  T
Q  197 aggcgcgccctcct 210  Q
    ||||||| ||||||    
T  23696275 aggcgcgtcctcct 23696288  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 26383837 - 26383891
Alignment:
Q  101 accgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgccct 155  Q
    ||||||||||||||||| || |||| |||||||||||||||| |||| |||||||    
T  26383837 accgtcataatattcctaaaggcttagaagccctctagaagggcttagacgccct 26383891  T

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Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 98 - 216
Target Start/End: Complemental strand, 13728166 - 13728047
Alignment:
Q  98 tggaccgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgcccttcgtaagggcctaaaagcctt-ccagaagggttattgggttt 196  Q
    |||||||||||||||||| || |||||| |||  ||||   |||| |||||||||||||||||||| ||||||||  || ||| ||||||||||||||||    
T  13728166 tggaccgtcataatattcttctaagcttagaaatcctcggaaaggtcttaaacgcccttcgtaaggacctaaaaggttttccaaaagggttattgggttt 13728067  T
Q  197 aggcgcgccctcctaaagga 216  Q
    ||||||||||||||||||||    
T  13728066 aggcgcgccctcctaaagga 13728047  T

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Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 98 - 210
Target Start/End: Complemental strand, 17997324 - 17997211
Alignment:
Q  98 tggaccgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgcccttcgtaagggcctaaaa-gccttccagaagggttattgggttt 196  Q
    |||||||||||||||||| ||||||||| ||| |||||   |||| |||||| ||||||||||||| ||||||| |  ||||| ||||||||||||||||    
T  17997324 tggaccgtcataatattcttcaaagcttagaaaccctcggaaaggtcttaaatgcccttcgtaaggacctaaaaggttttccaaaagggttattgggttt 17997225  T
Q  197 aggcgcgccctcct 210  Q
    ||||||||||||||    
T  17997224 aggcgcgccctcct 17997211  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 171
Target Start/End: Original strand, 22467182 - 22467255
Alignment:
Q  98 tggaccgtcataatattcctcaaagctttgaagccctctagaagga-cttaaacgcccttcgtaagggcctaaaa 171  Q
    |||||||||||||||||||  | ||||| ||  |||||| |||||| |||||||||||||||||||| |||||||    
T  22467182 tggaccgtcataatattccgaagagcttagagaccctct-gaaggatcttaaacgcccttcgtaaggacctaaaa 22467255  T

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Target: scaffold0320 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 140 - 240
Target Start/End: Original strand, 11712 - 11813
Alignment:
Q  140 aggacttaaacgcccttcgtaagggcctaaaagcctt-ccagaagggttattgggtttaggcgcgccctcctaaaggatgccgccctccttaacctccag 238  Q
    |||||||||||||||||||||||||||||||||  || ||| || ||||||||||||||||||||||||| |||| |||| ||||||||| ||||| |||    
T  11712 aggacttaaacgcccttcgtaagggcctaaaaggttttccaaaaaggttattgggtttaggcgcgccctcttaaaagatgtcgccctcctgaaccttcag 11811  T
Q  239 aa 240  Q
    ||    
T  11812 aa 11813  T

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Target: scaffold0037 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 98 - 210
Target Start/End: Complemental strand, 21016 - 20903
Alignment:
Q  98 tggaccgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgcccttcgtaagggcctaaaa-gccttccagaagggttattgggttt 196  Q
    |||||||||||||||||| ||||||||| ||| |||||   |||| |||||| ||||||| ||||| ||||||| |  ||||| ||||||||||||||||    
T  21016 tggaccgtcataatattcttcaaagcttagaaaccctcggaaaggtcttaaatgcccttcataaggacctaaaaggttttccaaaagggttattgggttt 20917  T
Q  197 aggcgcgccctcct 210  Q
    |||||| |||||||    
T  20916 aggcgccccctcct 20903  T

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Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 147 - 240
Target Start/End: Complemental strand, 24277559 - 24277465
Alignment:
Q  147 aaacgcccttcgtaagggcctaaaagcctt-ccagaagggttattgggtttaggcgcgccctcctaaaggatgccgccctccttaacctccagaa 240  Q
    ||||||||||||||||| ||| ||||  || ||| |||||||||||||||||||||||||||||||| ||| |||| |||||| ||||| |||||    
T  24277559 aaacgcccttcgtaaggaccttaaaggttttccaaaagggttattgggtttaggcgcgccctcctaagggacgccgtcctcctgaaccttcagaa 24277465  T

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Target: scaffold0179 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 210
Target Start/End: Original strand, 27153 - 27263
Alignment:
Q  101 accgtcataatattcctcaaagctttgaagccctctagaaggacttaaacgcccttcgtaagggcctaaaa-gccttccagaagggttattgggtttagg 199  Q
    ||||||||||||||| ||||| ||| ||| |||||   |||| |||||| | ||||||||||| ||||||| |  ||||| |||||||||||||||||||    
T  27153 accgtcataatattcttcaaaacttagaaaccctcgtaaaggtcttaaatgtccttcgtaaggacctaaaaggttttccaaaagggttattgggtttagg 27252  T
Q  200 cgcgccctcct 210  Q
    ||| |||||||    
T  27253 cgccccctcct 27263  T

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Target: scaffold0369 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 7187 - 7236
Alignment:
Q  97 ctggaccgtcataatattcctcaaagctttgaagccctctagaaggactt 146  Q
    |||||||||||||||||||||| |||||| ||| ||||||||||||||||    
T  7187 ctggaccgtcataatattcctcgaagcttagaaaccctctagaaggactt 7236  T

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Target: scaffold0878 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0878
Description:

Target: scaffold0878; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 1467 - 1515
Alignment:
Q  98 tggaccgtcataatattcctcaaagctttgaagccctctagaaggactt 146  Q
    ||||||||||||||||||||| |||||| ||| ||||||||||||||||    
T  1467 tggaccgtcataatattcctcgaagcttagaaaccctctagaaggactt 1515  T

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Target: scaffold0438 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 252
Target Start/End: Complemental strand, 4088 - 4012
Alignment:
Q  176 tccagaagggttattgggtttaggcgcgccctcctaaaggatgccgccctccttaacctccagaagcttctagaaac 252  Q
    ||||||| |||||||||| ||||||||| |||||||||||||| ||||  | ||| ||||| ||||||||| |||||    
T  4088 tccagaaaggttattggggttaggcgcgtcctcctaaaggatgtcgcctcctttagcctcccgaagcttctggaaac 4012  T

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Target: scaffold0001 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 139
Target Start/End: Original strand, 30188 - 30227
Alignment:
Q  100 gaccgtcataatattcctcaaagctttgaagccctctaga 139  Q
    ||||||||||||||||||||||||||  ||||||||||||    
T  30188 gaccgtcataatattcctcaaagcttataagccctctaga 30227  T

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Target: scaffold0001; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 139
Target Start/End: Original strand, 35495 - 35534
Alignment:
Q  100 gaccgtcataatattcctcaaagctttgaagccctctaga 139  Q
    ||||||||||||||||||||||||||  ||||||||||||    
T  35495 gaccgtcataatattcctcaaagcttataagccctctaga 35534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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