View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17748_low_2 (Length: 475)

Name: NF17748_low_2
Description: NF17748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17748_low_2
NF17748_low_2
[»] chr2 (16 HSPs)
chr2 (11-461)||(31613357-31613812)
chr2 (126-362)||(31608837-31609074)
chr2 (64-129)||(27331839-27331904)
chr2 (82-124)||(3121422-3121464)
chr2 (64-126)||(7079368-7079430)
chr2 (69-115)||(19951530-19951576)
chr2 (82-119)||(596125-596162)
chr2 (62-127)||(3098204-3098269)
chr2 (62-127)||(25270934-25270999)
chr2 (49-118)||(29765730-29765798)
chr2 (64-129)||(31024166-31024231)
chr2 (69-118)||(36104297-36104346)
chr2 (64-125)||(44274541-44274602)
chr2 (84-117)||(44868519-44868552)
chr2 (82-122)||(15916735-15916775)
chr2 (69-113)||(39939846-39939890)
[»] chr8 (9 HSPs)
chr8 (49-130)||(13964413-13964493)
chr8 (82-131)||(24471275-24471324)
chr8 (49-113)||(39099611-39099674)
chr8 (66-113)||(10335224-10335271)
chr8 (64-130)||(10934683-10934749)
chr8 (72-118)||(44098998-44099044)
chr8 (64-125)||(41753757-41753818)
chr8 (69-118)||(41753843-41753892)
chr8 (69-117)||(45045462-45045510)
[»] chr7 (12 HSPs)
chr7 (64-134)||(14995855-14995925)
chr7 (82-117)||(6803471-6803506)
chr7 (97-129)||(27389747-27389779)
chr7 (82-129)||(37930796-37930843)
chr7 (69-115)||(4089138-4089184)
chr7 (69-119)||(29205317-29205367)
chr7 (63-129)||(43103067-43103133)
chr7 (64-129)||(25245223-25245288)
chr7 (64-132)||(12274801-12274869)
chr7 (82-114)||(21586824-21586856)
chr7 (65-129)||(31814714-31814778)
chr7 (66-118)||(44819670-44819722)
[»] chr5 (14 HSPs)
chr5 (82-127)||(17153521-17153566)
chr5 (69-133)||(71250-71314)
chr5 (69-117)||(4297282-4297330)
chr5 (65-117)||(25941750-25941802)
chr5 (69-117)||(32398088-32398136)
chr5 (82-129)||(15549423-15549470)
chr5 (64-119)||(17967395-17967450)
chr5 (69-119)||(4967719-4967769)
chr5 (64-118)||(18652845-18652899)
chr5 (69-118)||(23262519-23262568)
chr5 (82-119)||(26045317-26045354)
chr5 (69-117)||(4738318-4738366)
chr5 (89-129)||(28518713-28518753)
chr5 (69-117)||(43438340-43438388)
[»] chr3 (16 HSPs)
chr3 (64-119)||(20625244-20625299)
chr3 (64-118)||(10872678-10872732)
chr3 (64-117)||(8150012-8150065)
chr3 (64-129)||(48191710-48191775)
chr3 (87-129)||(331794-331836)
chr3 (82-124)||(37897780-37897822)
chr3 (62-127)||(21217163-21217228)
chr3 (65-118)||(24270459-24270512)
chr3 (88-129)||(27224575-27224616)
chr3 (80-113)||(27601254-27601287)
chr3 (64-117)||(51253677-51253730)
chr3 (64-129)||(52215960-52216025)
chr3 (69-129)||(7882276-7882336)
chr3 (89-129)||(24694333-24694373)
chr3 (65-129)||(27707173-27707237)
chr3 (64-124)||(40639789-40639849)
[»] chr4 (19 HSPs)
chr4 (82-132)||(6975031-6975081)
chr4 (62-127)||(34616212-34616277)
chr4 (62-127)||(39160892-39160957)
chr4 (62-127)||(47181556-47181621)
chr4 (64-119)||(55936067-55936122)
chr4 (69-119)||(24798212-24798262)
chr4 (82-124)||(40575839-40575881)
chr4 (64-129)||(20598337-20598402)
chr4 (64-117)||(22586785-22586838)
chr4 (64-129)||(29006915-29006980)
chr4 (62-127)||(48402489-48402554)
chr4 (64-129)||(54164893-54164958)
chr4 (16-115)||(2253985-2254084)
chr4 (82-118)||(21142096-21142132)
chr4 (82-118)||(24133696-24133732)
chr4 (69-117)||(26863105-26863153)
chr4 (69-129)||(36786145-36786205)
chr4 (69-117)||(43616230-43616278)
chr4 (64-120)||(52914078-52914134)
[»] chr1 (7 HSPs)
chr1 (64-118)||(34953902-34953956)
chr1 (62-127)||(24981919-24981984)
chr1 (65-117)||(18607166-18607218)
chr1 (64-118)||(8396996-8397050)
chr1 (65-119)||(14365446-14365500)
chr1 (62-119)||(46906866-46906923)
chr1 (69-117)||(6156641-6156689)
[»] chr6 (10 HSPs)
chr6 (64-129)||(12104740-12104805)
chr6 (69-129)||(8449661-8449721)
chr6 (69-129)||(8458465-8458525)
chr6 (49-117)||(34170085-34170152)
chr6 (82-129)||(33689224-33689271)
chr6 (64-118)||(18886314-18886368)
chr6 (69-129)||(10258299-10258359)
chr6 (69-117)||(16121050-16121098)
chr6 (82-114)||(20704033-20704065)
chr6 (82-118)||(34792462-34792498)
[»] scaffold0149 (1 HSPs)
scaffold0149 (64-124)||(24686-24746)
[»] scaffold0009 (1 HSPs)
scaffold0009 (64-124)||(145968-146028)


Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 11 - 461
Target Start/End: Original strand, 31613357 - 31613812
Alignment:
Q  11 tatactttttagatttatttcataattgacgcatgtggtataatatagactcgcatatatcatttatttattgaatttaaaatattgatttttgtttata 110  Q
    ||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31613357 tatactttttagatttatttcataattgatgtatgtggtataatgtagactcgcatatatcatttattgattgaatttaaaatattgatttttgtttata 31613456  T
Q  111 atagtgacctgaggatgtagtttgctatctgatcgattacaatttttaaaattttcaatctcttgtttagcactatattgacccctaagtcgactacaaa 210  Q
    | ||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| || | |||| ||||||||||||||    
T  31613457 acagtgaccagaggatgtagtttgctatatggtcgattacaatttttaaaattttcaatctcttgtttagcactacatcggccccaaagtcgactacaaa 31613556  T
Q  211 ttaacaattcttcttttgatacaaaaattaacaaatttttagtatcacatagtgcatgtgaaaacatacagccacctggtcttgaccgaagtcggtaatc 310  Q
    |||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||| ||| |||| |||| || ||||||| ||||||||||    
T  31613557 ttaacaattcttcttttgatacgaaaattaacaaatttttagtat--catagtgcatgtgaaaatatagagccgcctgatcgtgaccgatgtcggtaatc 31613654  T
Q  311 ttttcaattgtactc-tttaatgcaaacactaaaactatgcttactggaaagaggnnnnnnngagttgttgtccatgtgaacatagataagttggg---- 405  Q
    ||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||        
T  31613655 ttttcgattgtactcttttaatccaaacactaaaactatgcttactggaaagaggagaaaaagagttgttgtccatgtgaacatagataagttgggcagg 31613754  T
Q  406 --cgttgagagtatgtttagattggggaatattttgacgtaacataatatgcacctta 461  Q
      |||| |||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  31613755 aacgttaagagtatgtttagattggggaatattttgacgtaacgtaatatccacctta 31613812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 126 - 362
Target Start/End: Original strand, 31608837 - 31609074
Alignment:
Q  126 tgtagtttgctatctgatcgattacaa-tttttaaaattttcaatctcttgtttagcactatattgacccctaagtcgactacaaattaacaattcttct 224  Q
    |||| ||||||| ||| |||| ||||| ||||| ||||||||||||||||||||||||||| |  | || ||||||||||||||||| ||||||||||||    
T  31608837 tgtactttgctacctggtcgactacaaattttttaaattttcaatctcttgtttagcactacaccggcctctaagtcgactacaaatcaacaattcttct 31608936  T
Q  225 tttgatacaaaaattaacaaatttttagtatcacatagtgcatgtgaaaacatacagccacctggtcttgaccgaag-tcggtaatcttttcaattgtac 323  Q
    |||||||  |||||||| |||||||||||||  |||||||||||||||||| || |||| ||||||| ||| ||||| | ||||||||||||  |  |||    
T  31608937 tttgatatgaaaattaataaatttttagtat--catagtgcatgtgaaaacgtagagccgcctggtcgtgagcgaagctgggtaatcttttcggtgatac 31609034  T
Q  324 tc-tttaatgcaaacactaaaactatgcttactggaaaga 362  Q
    || |||||||||||||||||||||||||||||| ||||||    
T  31609035 tcttttaatgcaaacactaaaactatgcttactagaaaga 31609074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 27331839 - 27331904
Alignment:
Q  64 catatatcatttatttattgaatttaaaatattgatttttgtttataatagtgacctgaggatgta 129  Q
    |||| |||||| ||| | ||||| |||||| |||||||||| |||||||||||||| |||||||||    
T  27331839 catacatcattaattgaatgaatctaaaatgttgatttttgcttataatagtgaccggaggatgta 27331904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 3121464 - 3121422
Alignment:
Q  82 tgaatttaaaatattgatttttgtttataatagtgacctgagg 124  Q
    ||||| ||||||||||||||||| |||||||||||||| ||||    
T  3121464 tgaatctaaaatattgatttttgcttataatagtgaccggagg 3121422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 7079430 - 7079368
Alignment:
Q  64 catatatcatttatttattgaatttaaaatattgatttttgtttataatagtgacctgaggat 126  Q
    ||||||||||||| |   |||||||||||| |||||||||| |||||||||||| | ||||||    
T  7079430 catatatcatttaatggatgaatttaaaatgttgatttttgcttataatagtgatcggaggat 7079368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 115
Target Start/End: Original strand, 19951530 - 19951576
Alignment:
Q  69 atcatttatttattgaatttaaaatattgatttttgtttataatagt 115  Q
    |||||| ||| | ||||| ||||||||||||||||||||||||||||    
T  19951530 atcattaattgaatgaatataaaatattgatttttgtttataatagt 19951576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 596125 - 596162
Alignment:
Q  82 tgaatttaaaatattgatttttgtttataatagtgacc 119  Q
    ||||||| |||| |||||||||||||||||||||||||    
T  596125 tgaatttgaaatgttgatttttgtttataatagtgacc 596162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 3098204 - 3098269
Alignment:
Q  62 cgcatatatcatttatttattgaatttaaaatattgatttttgtttataatagtgacctgaggatg 127  Q
    |||||| |||||||| | | ||||| |||||| | |||||||| |||||||||||||| |||||||    
T  3098204 cgcatacatcatttaatgaatgaatctaaaatgtagatttttgcttataatagtgaccggaggatg 3098269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 25270934 - 25270999
Alignment:
Q  62 cgcatatatcatttatttattgaatttaaaatattgatttttgtttataatagtgacctgaggatg 127  Q
    |||||| |||||||| | | ||||| |||||| | |||||||| |||||||||||||| |||||||    
T  25270934 cgcatacatcatttaatgaatgaatctaaaatgtagatttttgcttataatagtgaccggaggatg 25270999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 118
Target Start/End: Original strand, 29765730 - 29765798
Alignment:
Q  49 tataatatagactcgcatatatcatttatttattgaatttaaaatattgatttttgtttataatagtgac 118  Q
    |||||||||||| ||||||||||| ||||| | ||||| |||||  |||||||||| ||||||| |||||    
T  29765730 tataatatagac-cgcatatatcacttattcaatgaatctaaaaagttgatttttggttataattgtgac 29765798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 129
Target Start/End: Complemental strand, 31024231 - 31024166
Alignment:
Q  64 catatatcatttatttattgaatttaaaatattgatttttgtttataatagtgacctgaggatgta 129  Q
    |||| |||||||| | | ||||| |||||| |||||||||| ||||||||||||||  ||||||||    
T  31024231 catacatcatttaatgaatgaatctaaaatgttgatttttgcttataatagtgaccgtaggatgta 31024166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 36104346 - 36104297
Alignment:
Q  69 atcatttatttattgaatttaaaatattgatttttgtttataatagtgac 118  Q
    ||||| |||||| | || ||||||||| ||||||||||||||||||||||    
T  36104346 atcatgtatttagtaaacttaaaatatagatttttgtttataatagtgac 36104297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 44274602 - 44274541
Alignment:
Q  64 catatatcatttatttattgaatttaaaatattgatttttgtttataatagtgacctgagga 125  Q
    ||||||||||||||| | ||||| |||||| |  | |||||||||||||||||||| |||||    
T  44274602 catatatcatttattgaatgaatctaaaatgtcaacttttgtttataatagtgaccggagga 44274541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 117
Target Start/End: Complemental strand, 44868552 - 44868519
Alignment:
Q  84 aatttaaaatattgatttttgtttataatagtga 117  Q
    |||||||||| |||||||||||||||||||||||    
T  44868552 aatttaaaatgttgatttttgtttataatagtga 44868519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 122
Target Start/End: Complemental strand, 15916775 - 15916735
Alignment:
Q  82 tgaatttaaaatattgatttttgtttataatagtgacctga 122  Q
    ||||| ||||||||||||||||| |||||||| ||||||||    
T  15916775 tgaatctaaaatattgatttttgcttataatactgacctga 15916735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 39939846 - 39939890
Alignment:
Q  69 atcatttatttattgaatttaaaatattgatttttgtttataata 113  Q
    |||||||||| | ||||||||||||||  ||||||||||||||||    
T  39939846 atcatttattaaatgaatttaaaatatcaatttttgtttataata 39939890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 49 - 130
Target Start/End: Complemental strand, 13964493 - 13964413
Alignment:
Q  49 tataatatagactcgcatatatcatttatttattgaatttaaaatattgatttttgtttataatagtgacctgaggatgtag 130  Q
    |||||||||||| | |||| |||||||||| | |||||||||||| |||||||||| |||||||||||||| |||| |||||    
T  13964493 tataatatagac-cacatacatcatttattgaatgaatttaaaatgttgatttttgcttataatagtgaccagagggtgtag 13964413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 82 - 131
Target Start/End: Original strand, 24471275 - 24471324
Alignment:
Q  82 tgaatttaaaatattgatttttgtttataatagtgacctgaggatgtagt 131  Q
    ||||| |||||| || |||||||||||||||||||||| |||||||||||    
T  24471275 tgaatctaaaatgttaatttttgtttataatagtgaccggaggatgtagt 24471324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 113
Target Start/End: Original strand, 39099611 - 39099674
Alignment:
Q  49 tataatatagactcgcatatatcatttatttattgaatttaaaatattgatttttgtttataata 113  Q
    ||||||||||| || ||||||| ||||||| | |||||||||||| |||||||||| ||||||||    
T  39099611 tataatataga-tcacatatattatttattgactgaatttaaaatgttgatttttgcttataata 39099674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 113
Target Start/End: Original strand, 10335224 - 10335271
Alignment:
Q  66 tatatcatttatttattgaatttaaaatattgatttttgtttataata 113  Q
    ||||||||||| | | ||||| ||||||||||||||||||||||||||    
T  10335224 tatatcatttaataaatgaatctaaaatattgatttttgtttataata 10335271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 130
Target Start/End: Original strand, 10934683 - 10934749
Alignment:
Q  64 catatatcatttatttattgaatttaaaatattgatttttgtttataatagtgacctgaggatgtag 130  Q
    |||| |||||||| | | ||||| |||||| |||||||||| |||||||||||||| |||| |||||    
T  10934683 catacatcatttaatgaatgaatctaaaatgttgatttttgcttataatagtgaccggagggtgtag 10934749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 44099044 - 44098998
Alignment:
Q  72 atttatttattgaatttaaaatattgatttttgtttataatagtgac 118  Q
    ||||||| | |||||||||||| ||||||||||||||||||| ||||    
T  44099044 atttattgaatgaatttaaaatgttgatttttgtttataataatgac 44098998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 41753818 - 41753757
Alignment:
Q  64 catatatcatttatttattgaatttaaaatattgatttttgtttataatagtgacctgagga 125  Q
    |||| |||||||| | | |||||||||||| |||| ||||| |||||||||||||| |||||    
T  41753818 catacatcatttaatgaatgaatttaaaatgttgaattttgcttataatagtgaccagagga 41753757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 41753843 - 41753892
Alignment:
Q  69 atcatttatttattgaatttaaaatattgatttttgtttataatagtgac 118  Q
    |||||| ||| | ||||| ||||||||| |||||||||||||||||||||    
T  41753843 atcattaattgaatgaatctaaaatattaatttttgtttataatagtgac 41753892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 45045462 - 45045510
Alignment:
Q  69 atcatttatttattgaatttaaaatattgatttttgtttataatagtga 117  Q
    |||||| ||| | ||||| |||||||| |||||||||||||||||||||    
T  45045462 atcattaattgaatgaatctaaaatatagatttttgtttataatagtga 45045510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 64 - 134
Target Start/End: Complemental strand, 14995925 - 14995855
Alignment:
Q  64 catatatcatttatttattgaatttaaaatattgatttttgtttataatagtgacctgaggatgtagtttg 134  Q
    ||||||||||||||| | ||||||||||| ||||||||||| ||||| | |||||| |||| |||||||||    
T  14995925 catatatcatttattgaatgaatttaaaacattgatttttgcttatatttgtgaccggagggtgtagtttg 14995855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 117
Target Start/End: Original strand, 6803471 - 6803506
Alignment:
Q  82 tgaatttaaaatattgatttttgtttataatagtga 117  Q
    ||||||||||||||||||||||||||||||||||||    
T  6803471 tgaatttaaaatattgatttttgtttataatagtga 6803506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 129
Target Start/End: Complemental strand, 27389779 - 27389747
Alignment:
Q  97 gatttttgtttataatagtgacctgaggatgta 129  Q
    |||||||||||||||||||||||||||||||||    
T  27389779 gatttttgtttataatagtgacctgaggatgta 27389747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 37930796 - 37930843
Alignment:
Q  82 tgaatttaaaatattgatttttgtttataatagtgacctgaggatgta 129  Q
    ||||| ||||||||| |||||||||||||||||||||| || ||||||    
T  37930796 tgaatctaaaatattaatttttgtttataatagtgaccggatgatgta 37930843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 115
Target Start/End: Complemental strand, 4089184 - 4089138
Alignment:
Q  69 atcatttatttattgaatttaaaatattgatttttgtttataatagt 115  Q
    |||||||| | | ||||| ||||||||||||||||||||||||||||    
T  4089184 atcatttaatgaatgaatataaaatattgatttttgtttataatagt 4089138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 29205367 - 29205317
Alignment:
Q  69 atcatttatttattgaatttaaaatattgatttttgtttataatagtgacc 119  Q
    |||||| ||||| |||||  |||||||||||||||| ||||||||||||||    
T  29205367 atcattaatttaatgaataaaaaatattgatttttgcttataatagtgacc 29205317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 43103133 - 43103067
Alignment:
Q  63 gcatatatcatttatttattgaatttaaaatattgatttttgtttataatagtgacctgaggatgta 129  Q
    ||||| |||||||| | | |||||||||||| || ||||||| |||||||||||||| |||| ||||    
T  43103133 gcatacatcatttaataaatgaatttaaaatgttaatttttgcttataatagtgaccggagggtgta 43103067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 25245223 - 25245288
Alignment:
Q  64 catatatcatttatttattgaatttaaaatattgatttttgtttataatagtgacctgaggatgta 129  Q
    |||| |||||||| | | ||||| |||||| |||||||||| |||||||||||||| |||| ||||    
T  25245223 catacatcatttaatgaatgaatctaaaatgttgatttttgcttataatagtgaccggagggtgta 25245288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 132
Target Start/End: Complemental strand, 12274869 - 12274801
Alignment:
Q  64 catatatcatttatttattgaatttaaaatattgatttttgtttataatagtgacctgaggatgtagtt 132  Q
    |||| |||||||||| | ||||  |||||| | |||||||| |||||||||||||| |||| |||||||    
T  12274869 catacatcatttattgaatgaacataaaatgtggatttttgcttataatagtgaccagagggtgtagtt 12274801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 114
Target Start/End: Complemental strand, 21586856 - 21586824
Alignment:
Q  82 tgaatttaaaatattgatttttgtttataatag 114  Q
    ||||| |||||||||||||||||||||||||||    
T  21586856 tgaatctaaaatattgatttttgtttataatag 21586824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 129
Target Start/End: Original strand, 31814714 - 31814778
Alignment:
Q  65 atatatcatttatttattgaatttaaaatattgatttttgtttataatagtgacctgaggatgta 129  Q
    |||||||||||| | | ||||||||||||||| ||||||| |||||| | | ||| |||||||||    
T  31814714 atatatcatttaataaatgaatttaaaatatttatttttgcttataaaaataaccagaggatgta 31814778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 44819722 - 44819670
Alignment:
Q  66 tatatcatttatttattgaatttaaaatattgatttttgtttataatagtgac 118  Q
    ||||||||||||||| | ||| ||||| ||  |||||||||||||||||||||    
T  44819722 tatatcatttatttaataaatctaaaaaatacatttttgtttataatagtgac 44819670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 17153521 - 17153566
Alignment:
Q  82 tgaatttaaaatattgatttttgtttataatagtgacctgaggatg 127  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||    
T  17153521 tgaatttaaaatatagatttttgtttataatagtgaccggaggatg 17153566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 71314 - 71250
Alignment:
Q  69 atcatttatttattgaatttaaaatattgatttttgtttataatagtgacctgaggatgtagttt 133  Q
    |||||| ||| | ||||| |||||||| |||||||| |||||||||||||| |||| ||||||||    
T  71314 atcattaattgaatgaatctaaaatatagatttttgcttataatagtgaccggagggtgtagttt 71250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 4297282 - 4297330
Alignment:
Q  69 atcatttatttattgaatttaaaatattgatttttgtttataatagtga 117  Q
    |||||||| ||| ||||| |||||| |||||||||||||||||||||||    
T  4297282 atcatttaattaatgaatataaaatgttgatttttgtttataatagtga 4297330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 25941750 - 25941802
Alignment:
Q  65 atatatcatttatttattgaatttaaaatattgatttttgtttataatagtga 117  Q
    |||||| ||| ||| | |||| |||||||||||||||||||||||||||||||    
T  25941750 atatattattaattgaatgaacttaaaatattgatttttgtttataatagtga 25941802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 32398088 - 32398136
Alignment:
Q  69 atcatttatttattgaatttaaaatattgatttttgtttataatagtga 117  Q
    |||||| ||| | |||||||||||||| |||||||||||||||||||||    
T  32398088 atcattaattgaatgaatttaaaatatagatttttgtttataatagtga 32398136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 15549423 - 15549470
Alignment:
Q  82 tgaatttaaaatattgatttttgtttataatagtgacctgaggatgta 129  Q
    ||||| |||||| ||||||||||||||||||||||||| |||| ||||    
T  15549423 tgaatctaaaatgttgatttttgtttataatagtgaccggagggtgta 15549470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 17967395 - 17967450
Alignment:
Q  64 catatatcatttatttattgaatttaaaatattgatttttgtttataatagtgacc 119  Q
    |||| |||||||||| | ||||| ||||||||  ||||||||||||||||||||||    
T  17967395 catacatcatttattgaatgaatataaaatatcaatttttgtttataatagtgacc 17967450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 4967769 - 4967719
Alignment:
Q  69 atcatttatttattgaatttaaaatattgatttttgtttataatagtgacc 119  Q
    |||||||| | | |||||||||||| |||||||||||||| ||||||||||    
T  4967769 atcatttaataaatgaatttaaaatgttgatttttgtttaaaatagtgacc 4967719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 18652845 - 18652899
Alignment:
Q  64 catatatcatttatttattgaatttaaaatattgatttttgtttataatagtgac 118  Q
    |||| |||||||| | | ||||| |||||| ||||||||||||||||||||||||    
T  18652845 catacatcatttaatgaatgaatctaaaatgttgatttttgtttataatagtgac 18652899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 23262519 - 23262568
Alignment:
Q  69 atcatttatttattgaatttaaaatattgatttttgtttataatagtgac 118  Q
    |||||||||||| ||||||||||| ||||| ||||| |||||||| ||||    
T  23262519 atcatttatttaatgaatttaaaaaattgaattttgcttataataatgac 23262568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 26045317 - 26045354
Alignment:
Q  82 tgaatttaaaatattgatttttgtttataatagtgacc 119  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  26045317 tgaatctaaaatgttgatttttgtttataatagtgacc 26045354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 4738318 - 4738366
Alignment:
Q  69 atcatttatttattgaatttaaaatattgatttttgtttataatagtga 117  Q
    |||||||||| ||||||  ||||| ||| ||||||||||||||||||||    
T  4738318 atcatttattgattgaacctaaaaaattaatttttgtttataatagtga 4738366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 28518753 - 28518713
Alignment:
Q  89 aaaatattgatttttgtttataatagtgacctgaggatgta 129  Q
    ||||| |||||||||| |||||||||||||| |||||||||    
T  28518753 aaaatgttgatttttgcttataatagtgaccagaggatgta 28518713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 43438340 - 43438388
Alignment:
Q  69 atcatttatttattgaatttaaaatattgatttttgtttataatagtga 117  Q
    |||||||| | | ||||| ||||||||| ||||||||||||||||||||    
T  43438340 atcatttaatgaatgaatctaaaatattaatttttgtttataatagtga 43438388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 20625299 - 20625244
Alignment:
Q  64 catatatcatttatttattgaatttaaaatattgatttttgtttataatagtgacc 119  Q
    |||| |||||||| | | |||||||||||| |||||||||||||||||||||||||    
T  20625299 catacatcatttaataaatgaatttaaaatgttgatttttgtttataatagtgacc 20625244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 118
Target Start/End: Complemental strand, 10872732 - 10872678
Alignment:
Q  64 catatatcatttatttattgaatttaaaatattgatttttgtttataatagtgac 118  Q
    |||| |||||||| | | ||||||||||||||||||||||| |||||||||||||    
T  10872732 catacatcatttaatgaatgaatttaaaatattgatttttgcttataatagtgac 10872678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 8150012 - 8150065
Alignment:
Q  64 catatatcatttatttattgaatttaaaatattgatttttgtttataatagtga 117  Q
    |||||||| |||||| | | |||||||||| |||||||||||||||||||||||    
T  8150012 catatatcgtttattgaataaatttaaaatgttgatttttgtttataatagtga 8150065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 64 - 129
Target Start/End: Complemental strand, 48191775 - 48191710
Alignment:
Q  64 catatatcatttatttattgaatttaaaatattgatttttgtttataatagtgacctgaggatgta 129  Q
    |||| |||||||| | | ||||| |||||| || |||||||||||||||||||||| |||||||||    
T  48191775 catacatcatttaatgaatgaatctaaaatgttaatttttgtttataatagtgaccggaggatgta 48191710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 331836 - 331794
Alignment:
Q  87 ttaaaatattgatttttgtttataatagtgacctgaggatgta 129  Q
    ||||||| |||||||||| |||||||||||||| |||||||||    
T  331836 ttaaaatgttgatttttgcttataatagtgaccggaggatgta 331794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 37897780 - 37897822
Alignment:
Q  82 tgaatttaaaatattgatttttgtttataatagtgacctgagg 124  Q
    |||||||||||| |||||||||| |||||||||||||| ||||    
T  37897780 tgaatttaaaatgttgatttttgcttataatagtgaccagagg 37897822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 21217228 - 21217163
Alignment:
Q  62 cgcatatatcatttatttattgaatttaaaatattgatttttgtttataatagtgacctgaggatg 127  Q
    |||||| |||||||| | | ||||| |||||| | |||||||| |||||||||||||| |||||||    
T  21217228 cgcatacatcatttaatgaatgaatctaaaatgtagatttttgcttataatagtgaccggaggatg 21217163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 118
Target Start/End: Complemental strand, 24270512 - 24270459
Alignment:
Q  65 atatatcatttatttattgaatttaaaatattgatttttgtttataatagtgac 118  Q
    |||||||||||| | | | ||||||||||||||||||||| |||||||| ||||    
T  24270512 atatatcatttaatcaataaatttaaaatattgatttttgcttataataatgac 24270459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 129
Target Start/End: Complemental strand, 27224616 - 27224575
Alignment:
Q  88 taaaatattgatttttgtttataatagtgacctgaggatgta 129  Q
    |||||| ||||||||||||||||||||||||| |||| ||||    
T  27224616 taaaatgttgatttttgtttataatagtgaccggagggtgta 27224575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 27601287 - 27601254
Alignment:
Q  80 attgaatttaaaatattgatttttgtttataata 113  Q
    |||||||||||||| |||||||||||||||||||    
T  27601287 attgaatttaaaatgttgatttttgtttataata 27601254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 51253730 - 51253677
Alignment:
Q  64 catatatcatttatttattgaatttaaaatattgatttttgtttataatagtga 117  Q
    |||| |||||||| | | || |||||||||||||||||||||||||||| ||||    
T  51253730 catacatcatttaataaatggatttaaaatattgatttttgtttataatggtga 51253677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 52215960 - 52216025
Alignment:
Q  64 catatatcatttatttattgaatttaaaatattgatttttgtttataatagtgacctgaggatgta 129  Q
    |||| |||||||| | | ||||| |||||| |||||||||| |||||||||||||| |||| ||||    
T  52215960 catacatcatttaatgagtgaatctaaaatgttgatttttgcttataatagtgaccggagggtgta 52216025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 129
Target Start/End: Complemental strand, 7882336 - 7882276
Alignment:
Q  69 atcatttatttattgaatttaaaatattgatttttgtttataatagtgacctgaggatgta 129  Q
    |||||||| ||| ||||| |||||| || ||||||| |||||||||||||| |||| ||||    
T  7882336 atcatttaattaatgaatctaaaatgttaatttttgcttataatagtgaccggagggtgta 7882276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 24694333 - 24694373
Alignment:
Q  89 aaaatattgatttttgtttataatagtgacctgaggatgta 129  Q
    ||||| ||||||||||||||||||||||| | |||||||||    
T  24694333 aaaatgttgatttttgtttataatagtgatcggaggatgta 24694373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 27707237 - 27707173
Alignment:
Q  65 atatatcatttatttattgaatttaaaatattgatttttgtttataatagtgacctgaggatgta 129  Q
    |||||||||||||| | ||||||||||||||  ||||||| ||||| | |||| | |||||||||    
T  27707237 atatatcatttattgaatgaatttaaaatatgaatttttgcttatatttgtgatcggaggatgta 27707173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 40639789 - 40639849
Alignment:
Q  64 catatatcatttatttattgaatttaaaatattgatttttgtttataatagtgacctgagg 124  Q
    |||| |||||||| | | |||||||||||| || ||||||| |||||||||||||| ||||    
T  40639789 catacatcatttaatgaatgaatttaaaatgttaatttttgcttataatagtgaccggagg 40639849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 132
Target Start/End: Original strand, 6975031 - 6975081
Alignment:
Q  82 tgaatttaaaatattgatttttgtttataatagtgacctgaggatgtagtt 132  Q
    |||||| ||||| |||||||||| |||||||||||||| ||||||||||||    
T  6975031 tgaattcaaaatgttgatttttgcttataatagtgaccggaggatgtagtt 6975081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 34616277 - 34616212
Alignment:
Q  62 cgcatatatcatttatttattgaatttaaaatattgatttttgtttataatagtgacctgaggatg 127  Q
    |||||| |||||||| | | ||||| |||||| | ||||||||||||||||||||||| |||||||    
T  34616277 cgcatacatcatttaatgaatgaatctaaaatgtagatttttgtttataatagtgaccagaggatg 34616212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 39160892 - 39160957
Alignment:
Q  62 cgcatatatcatttatttattgaatttaaaatattgatttttgtttataatagtgacctgaggatg 127  Q
    |||||| |||||||| | | ||||| |||||| | ||||||||||||||||||||||| |||||||    
T  39160892 cgcatacatcatttaatgaatgaatctaaaatgtagatttttgtttataatagtgaccggaggatg 39160957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 47181621 - 47181556
Alignment:
Q  62 cgcatatatcatttatttattgaatttaaaatattgatttttgtttataatagtgacctgaggatg 127  Q
    |||||| |||||||| | | |||||||||||| | |||||||| |||||||||||||| |||||||    
T  47181621 cgcatacatcatttaatgaatgaatttaaaatgtagatttttgcttataatagtgaccggaggatg 47181556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 55936067 - 55936122
Alignment:
Q  64 catatatcatttatttattgaatttaaaatattgatttttgtttataatagtgacc 119  Q
    |||| |||||||| | | ||||| ||||||||||||||||| ||||||||||||||    
T  55936067 catacatcatttaatgaatgaatctaaaatattgatttttgcttataatagtgacc 55936122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 24798212 - 24798262
Alignment:
Q  69 atcatttatttattgaatttaaaatattgatttttgtttataatagtgacc 119  Q
    |||||||| | | ||||||||||||||| ||||||| ||||||||||||||    
T  24798212 atcatttaatgaatgaatttaaaatattaatttttgcttataatagtgacc 24798262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 40575881 - 40575839
Alignment:
Q  82 tgaatttaaaatattgatttttgtttataatagtgacctgagg 124  Q
    |||||||||||| || |||||||||||||||||||||| ||||    
T  40575881 tgaatttaaaatgttcatttttgtttataatagtgaccggagg 40575839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 20598337 - 20598402
Alignment:
Q  64 catatatcatttatttattgaatttaaaatattgatttttgtttataatagtgacctgaggatgta 129  Q
    ||||||||||||||| | ||||| ||||| || |||||||||||||| | |||||| |||| ||||    
T  20598337 catatatcatttattgaatgaatctaaaacatggatttttgtttatatttgtgaccggagggtgta 20598402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 22586785 - 22586838
Alignment:
Q  64 catatatcatttatttattgaatttaaaatattgatttttgtttataatagtga 117  Q
    ||||||| ||||||| | | ||| ||||||||| ||||||||||||||||||||    
T  22586785 catatattatttattgactaaatctaaaatattaatttttgtttataatagtga 22586838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 29006915 - 29006980
Alignment:
Q  64 catatatcatttatttattgaatttaaaatattgatttttgtttataatagtgacctgaggatgta 129  Q
    |||| |||||||||| | |||||||||||  | || ||||| |||||||||||||| |||||||||    
T  29006915 catacatcatttattgaatgaatttaaaaagtggaattttgcttataatagtgaccggaggatgta 29006980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 48402489 - 48402554
Alignment:
Q  62 cgcatatatcatttatttattgaatttaaaatattgatttttgtttataatagtgacctgaggatg 127  Q
    |||||| |||||||| | | ||||| |||||||| |||||||| ||||||||||| || |||||||    
T  48402489 cgcatacatcatttaatgaatgaatctaaaatatagatttttgcttataatagtggccggaggatg 48402554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 54164893 - 54164958
Alignment:
Q  64 catatatcatttatttattgaatttaaaatattgatttttgtttataatagtgacctgaggatgta 129  Q
    |||| |||||||||| | ||||| ||||| || |||||||| |||||||||||||| |||| ||||    
T  54164893 catacatcatttattgaatgaatctaaaaaatagatttttgcttataatagtgaccggagggtgta 54164958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 2253985 - 2254084
Alignment:
Q  16 tttttagatttatttcataattgacgcatgtggtata-atatagactcgcatatatcatttatttattgaatttaaaatattgatttttgtttataatag 114  Q
    ||||||||||||||   ||| ||| | ||||||| || |||||||||  ||||||||||||||| | ||||||||||| ||  | |||||||||||||||    
T  2253985 tttttagatttattcattaaatgatgtatgtggtctatatatagacta-catatatcatttattgaatgaatttaaaaaataaacttttgtttataatag 2254083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 118
Target Start/End: Complemental strand, 21142132 - 21142096
Alignment:
Q  82 tgaatttaaaatattgatttttgtttataatagtgac 118  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  21142132 tgaatctaaaatgttgatttttgtttataatagtgac 21142096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 118
Target Start/End: Original strand, 24133696 - 24133732
Alignment:
Q  82 tgaatttaaaatattgatttttgtttataatagtgac 118  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  24133696 tgaatttaaaatattaatttttgattataatagtgac 24133732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 26863153 - 26863105
Alignment:
Q  69 atcatttatttattgaatttaaaatattgatttttgtttataatagtga 117  Q
    |||| ||||| | ||||||||||||||  ||||||||||||||||||||    
T  26863153 atcaattattcaatgaatttaaaatataaatttttgtttataatagtga 26863105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 129
Target Start/End: Complemental strand, 36786205 - 36786145
Alignment:
Q  69 atcatttatttattgaatttaaaatattgatttttgtttataatagtgacctgaggatgta 129  Q
    |||||| ||| | ||||| |||||| |||||||||||||||||||| |||| |||| ||||    
T  36786205 atcattaattgaatgaatctaaaatgttgatttttgtttataatagggaccggagggtgta 36786145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 43616230 - 43616278
Alignment:
Q  69 atcatttatttattgaatttaaaatattgatttttgtttataatagtga 117  Q
    |||||||| | | ||||||||||| ||||||||||| ||||||||||||    
T  43616230 atcatttaataaatgaatttaaaaaattgatttttgcttataatagtga 43616278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 52914078 - 52914134
Alignment:
Q  64 catatatcatttatttattgaatttaaaatattgatttttgtttataatagtgacct 120  Q
    |||| |||||||| | | ||||| ||||||||| ||||||| |||||||||||||||    
T  52914078 catacatcatttaatgaatgaatctaaaatattaatttttgcttataatagtgacct 52914134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 118
Target Start/End: Complemental strand, 34953956 - 34953902
Alignment:
Q  64 catatatcatttatttattgaatttaaaatattgatttttgtttataatagtgac 118  Q
    |||| |||||||| | | ||||||||||||||||||||||| |||||||||||||    
T  34953956 catacatcatttaatgaatgaatttaaaatattgatttttgcttataatagtgac 34953902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 24981919 - 24981984
Alignment:
Q  62 cgcatatatcatttatttattgaatttaaaatattgatttttgtttataatagtgacctgaggatg 127  Q
    |||||| |||||||| | | ||||| |||||| |||||||||| |||||||||||||| |||||||    
T  24981919 cgcatacatcatttaatgaatgaatctaaaatgttgatttttgcttataatagtgaccggaggatg 24981984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 18607166 - 18607218
Alignment:
Q  65 atatatcatttatttattgaatttaaaatattgatttttgtttataatagtga 117  Q
    |||||| ||| ||| | |||||||||||||| |||||||||||||||||||||    
T  18607166 atatattattaattgaatgaatttaaaatatagatttttgtttataatagtga 18607218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 118
Target Start/End: Complemental strand, 8397050 - 8396996
Alignment:
Q  64 catatatcatttatttattgaatttaaaatattgatttttgtttataatagtgac 118  Q
    ||||||||||||| | | | |||||||||||||||||| ||||||||||| ||||    
T  8397050 catatatcatttaataaataaatttaaaatattgatttctgtttataataatgac 8396996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 119
Target Start/End: Original strand, 14365446 - 14365500
Alignment:
Q  65 atatatcatttatttattgaatttaaaatattgatttttgtttataatagtgacc 119  Q
    |||||||||| ||| | ||||| ||||||||  ||||||||||||||||||||||    
T  14365446 atatatcattaattaaatgaatataaaatatatatttttgtttataatagtgacc 14365500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 119
Target Start/End: Complemental strand, 46906923 - 46906866
Alignment:
Q  62 cgcatatatcatttatttattgaatttaaaatattgatttttgtttataatagtgacc 119  Q
    |||||| |||||||| | | ||||| |||||||| |||||||| ||||||||||||||    
T  46906923 cgcatacatcatttaatgaatgaatctaaaatatagatttttgcttataatagtgacc 46906866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 6156689 - 6156641
Alignment:
Q  69 atcatttatttattgaatttaaaatattgatttttgtttataatagtga 117  Q
    |||||||||| | ||||| |||||  |||||||||||||||||||||||    
T  6156689 atcatttattgaatgaatctaaaaagttgatttttgtttataatagtga 6156641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 64 - 129
Target Start/End: Complemental strand, 12104805 - 12104740
Alignment:
Q  64 catatatcatttatttattgaatttaaaatattgatttttgtttataatagtgacctgaggatgta 129  Q
    |||| |||||||| | | |||||||||||| |||||||||| |||||||||||||| || ||||||    
T  12104805 catacatcatttaataaatgaatttaaaatgttgatttttgcttataatagtgaccggaagatgta 12104740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 129
Target Start/End: Original strand, 8449661 - 8449721
Alignment:
Q  69 atcatttatttattgaatttaaaatattgatttttgtttataatagtgacctgaggatgta 129  Q
    |||||| ||| | ||||| ||||||||| ||||||| |||||||||||||| |||||||||    
T  8449661 atcattaattgaatgaatctaaaatattaatttttgcttataatagtgaccggaggatgta 8449721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 129
Target Start/End: Original strand, 8458465 - 8458525
Alignment:
Q  69 atcatttatttattgaatttaaaatattgatttttgtttataatagtgacctgaggatgta 129  Q
    |||||| ||| | ||||| ||||||||| ||||||| |||||||||||||| |||||||||    
T  8458465 atcattaattgaatgaatctaaaatattaatttttgcttataatagtgaccggaggatgta 8458525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 34170152 - 34170085
Alignment:
Q  49 tataatatagactcgcatatatcatttatttattgaatttaaaatattgatttttgtttataatagtga 117  Q
    ||||||||||| || |||| |||||||| | | ||||| |||||| |||||||||||||||||||||||    
T  34170152 tataatataga-tcacatacatcatttaatgaatgaatctaaaatgttgatttttgtttataatagtga 34170085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 33689271 - 33689224
Alignment:
Q  82 tgaatttaaaatattgatttttgtttataatagtgacctgaggatgta 129  Q
    ||||| ||||||||||||||||| |||||||||||||| || ||||||    
T  33689271 tgaatataaaatattgatttttgcttataatagtgaccggatgatgta 33689224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 118
Target Start/End: Complemental strand, 18886368 - 18886314
Alignment:
Q  64 catatatcatttatttattgaatttaaaatattgatttttgtttataatagtgac 118  Q
    ||||||||||||| | | ||||| ||||||||| ||||||| |||||||||||||    
T  18886368 catatatcatttaatgaatgaatctaaaatattaatttttgcttataatagtgac 18886314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 129
Target Start/End: Complemental strand, 10258359 - 10258299
Alignment:
Q  69 atcatttatttattgaatttaaaatattgatttttgtttataatagtgacctgaggatgta 129  Q
    |||||||| | | ||||| |||||| ||||||||||||||||| ||||||  |||||||||    
T  10258359 atcatttaataaatgaatctaaaatgttgatttttgtttataacagtgactggaggatgta 10258299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 16121050 - 16121098
Alignment:
Q  69 atcatttatttattgaatttaaaatattgatttttgtttataatagtga 117  Q
    |||||||||||| ||||| |||||  |||||||||| ||||||||||||    
T  16121050 atcatttatttaatgaatctaaaaagttgatttttgcttataatagtga 16121098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 114
Target Start/End: Complemental strand, 20704065 - 20704033
Alignment:
Q  82 tgaatttaaaatattgatttttgtttataatag 114  Q
    ||||||||||||||||||||||| |||||||||    
T  20704065 tgaatttaaaatattgatttttgattataatag 20704033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 118
Target Start/End: Complemental strand, 34792498 - 34792462
Alignment:
Q  82 tgaatttaaaatattgatttttgtttataatagtgac 118  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  34792498 tgaatctaaaatattgatttttgtttatagtagtgac 34792462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 24686 - 24746
Alignment:
Q  64 catatatcatttatttattgaatttaaaatattgatttttgtttataatagtgacctgagg 124  Q
    |||| |||||||| | | ||||| ||||||||| ||||||| |||||||||||||| ||||    
T  24686 catacatcatttaatgaatgaatctaaaatattaatttttgcttataatagtgaccggagg 24746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 146028 - 145968
Alignment:
Q  64 catatatcatttatttattgaatttaaaatattgatttttgtttataatagtgacctgagg 124  Q
    |||| |||||||| | | ||||| ||||||  |||||||||||||||||||||||| ||||    
T  146028 catacatcatttaatgaatgaatctaaaatgatgatttttgtttataatagtgaccggagg 145968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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