View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17748_low_4 (Length: 427)
Name: NF17748_low_4
Description: NF17748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17748_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 123; Significance: 5e-63; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 4899352 - 4899202
Alignment:
| Q |
1 |
tttatttgaaaaattgagtataagttacctataataaaatgttcatggagtagacatgtctgattttaccaaattgtttgcttaccaccatcatacttat |
100 |
Q |
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| T |
4899352 |
tttatttgaaaaattgagtataagttacctataataaaatgttcatggagtagacatgtctgattttaccaaattgtttgcttaccaccatc------at |
4899259 |
T |
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| Q |
101 |
atttaggcatatcatatttc--ataacaataattcaacacttcatcttctttcaatc |
155 |
Q |
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| T |
4899258 |
atttaggcatatcatatttcatataacaataattcaacacttcatcttctttcaatc |
4899202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 357 - 417
Target Start/End: Complemental strand, 4899082 - 4899022
Alignment:
| Q |
357 |
aagagaattcaagttgaaactctcacataaataattatttgttggattttactattctctg |
417 |
Q |
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| T |
4899082 |
aagagaactcaagttgaaactctcacataaataattatttgttggattttactattctctg |
4899022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 4899203 - 4899151
Alignment:
| Q |
217 |
tcaaagtttatgcacttgggtgtccactaacaattttcatttacttatttatt |
269 |
Q |
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| T |
4899203 |
tcaaagtttatgcacttgggtgtccactagcaatttccatttacttatttatt |
4899151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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