View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17748_low_5 (Length: 411)
Name: NF17748_low_5
Description: NF17748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17748_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 22 - 396
Target Start/End: Complemental strand, 36139090 - 36138716
Alignment:
| Q |
22 |
ttatgtaggcacataatttacataaccagacaagcaaaagaacaaggaaaagaacctcttgtgttttcttataattctcttgaacagcagattttttctg |
121 |
Q |
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| T |
36139090 |
ttatgtaggcacataatttacataaccagacaagcaaaagaacaaggaaaagaacctcttgtgttttcttataattctcttgaacagcagattttttctg |
36138991 |
T |
|
| Q |
122 |
ctttatttctttgatgtttccatttaacttttccttctcctcagttaacctttctttctccttcgaatcctctattcctttagtcaacttcttcatcatc |
221 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
36138990 |
ctttatttctttgatgtttccatttaacttttcctcctcctcagttaacctttctttcttcttcgaatcctctattcctttagccaacttcttcatcatc |
36138891 |
T |
|
| Q |
222 |
ttttgccctgtctctatttgaaccttgtgacggttaatctctgagctggtcttgtcaatatcctagtaaatgggtaccattagtatagacacagcatcat |
321 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
36138890 |
tttttccctgtctctatttgaaccttgtgacggttaatcactgagctggtcttgtcaatatcttagtaaatgggtaccattagtatagacacagcatcat |
36138791 |
T |
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| Q |
322 |
attgaatttaaagttcttctcaatatccaggatgcttacagactgaattttctggaccttcaacttctgagattt |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36138790 |
attgaatttaaagttcttctcaatatccaggatgcttacagactgaattttctggaccttcaacttctgagattt |
36138716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 33 - 396
Target Start/End: Complemental strand, 30819721 - 30819358
Alignment:
| Q |
33 |
cataatttacataaccagacaagcaaaagaacaaggaaaagaacctcttgtgttttcttataattctcttgaacagcagattttttctgctttatttctt |
132 |
Q |
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|||| |||| ||||||| | ||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||| || |||||||| |||||||| |
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| T |
30819721 |
catagtttatataaccaaaaaagcaaaagaacaaggaaaagaacctcttctgttttctcataattcttttgaacagcaaatgctttctgctctatttctt |
30819622 |
T |
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| Q |
133 |
tgatgtttccatttaacttttccttctcctcagttaacctttctttctccttc---gaatcctctattcctttagtcaacttcttcatcatcttttgccc |
229 |
Q |
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||| |||||| |||||||||||| ||||||| | ||||| |||||| |||||| || ||||||||||| |||||||||||||||||||||||||| || |
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| T |
30819621 |
tgaagtttccttttaacttttccctctcctcggctaaccgttctttttccttctttgactcctctattcccttagtcaacttcttcatcatcttttggcc |
30819522 |
T |
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| Q |
230 |
tgtctctatttgaaccttgtgacggttaatctctgagctggtcttgtcaatatcctagtaaatgggtaccattagtatagacacagcatcatattgaatt |
329 |
Q |
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||||||||||| ||||| |||||||| ||||||||||||| |||||||||||||||| ||||||||||| |||||||||||| | |||| |||||||| |
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| T |
30819521 |
cgtctctatttggaccttatgacggttgatctctgagctggccttgtcaatatcctagaaaatgggtacctttagtatagacaaggtatcagattgaatt |
30819422 |
T |
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| Q |
330 |
taaagttcttctcaatatccaggatgcttacagactgaattttctggaccttcaacttctgagattt |
396 |
Q |
| |
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|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30819421 |
gaaag---ttctcaatatacaggatgcttacagactgaattttctggaccttcaacttctgagattt |
30819358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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