View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17748_low_7 (Length: 387)

Name: NF17748_low_7
Description: NF17748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17748_low_7
NF17748_low_7
[»] chr1 (19 HSPs)
chr1 (17-371)||(29099536-29099889)
chr1 (14-185)||(15495877-15496048)
chr1 (14-185)||(14351048-14351218)
chr1 (14-93)||(11814700-11814779)
chr1 (18-124)||(2077418-2077523)
chr1 (85-177)||(26842000-26842092)
chr1 (14-93)||(26842049-26842127)
chr1 (302-371)||(2509028-2509097)
chr1 (302-371)||(34307256-34307325)
chr1 (302-371)||(39249981-39250050)
chr1 (14-77)||(8039197-8039259)
chr1 (129-188)||(10494882-10494941)
chr1 (113-184)||(26236753-26236824)
chr1 (304-371)||(19258790-19258857)
chr1 (14-96)||(615641-615723)
chr1 (14-95)||(34654839-34654920)
chr1 (145-185)||(2077379-2077419)
chr1 (303-371)||(10146971-10147039)
chr1 (14-58)||(39709190-39709234)
[»] chr2 (22 HSPs)
chr2 (14-187)||(6705509-6705682)
chr2 (45-188)||(40900224-40900367)
chr2 (33-188)||(38531278-38531433)
chr2 (14-140)||(14950753-14950879)
chr2 (14-124)||(9910631-9910740)
chr2 (34-135)||(28164837-28164938)
chr2 (14-96)||(4869516-4869598)
chr2 (302-371)||(33732573-33732642)
chr2 (302-371)||(36315565-36315634)
chr2 (302-371)||(44958117-44958186)
chr2 (304-371)||(37914354-37914421)
chr2 (302-371)||(37498983-37499052)
chr2 (14-185)||(1551698-1551859)
chr2 (107-183)||(3921536-3921612)
chr2 (304-368)||(6376354-6376418)
chr2 (14-184)||(17282046-17282206)
chr2 (31-77)||(27888778-27888824)
chr2 (302-371)||(16089826-16089895)
chr2 (107-180)||(34660230-34660303)
chr2 (104-184)||(1895351-1895431)
chr2 (303-371)||(3831015-3831081)
chr2 (302-371)||(14572999-14573068)
[»] chr5 (25 HSPs)
chr5 (14-184)||(40680874-40681044)
chr5 (14-185)||(26331090-26331261)
chr5 (21-135)||(12156370-12156484)
chr5 (14-163)||(24867100-24867249)
chr5 (14-125)||(34574162-34574272)
chr5 (14-96)||(27170243-27170325)
chr5 (23-124)||(42268836-42268936)
chr5 (302-371)||(40888060-40888129)
chr5 (14-77)||(40599972-40600035)
chr5 (14-176)||(26656639-26656790)
chr5 (14-176)||(26928226-26928377)
chr5 (302-371)||(1815734-1815803)
chr5 (302-371)||(9408157-9408226)
chr5 (302-371)||(33404554-33404623)
chr5 (302-371)||(39370931-39371000)
chr5 (304-371)||(13347134-13347201)
chr5 (15-89)||(7271718-7271792)
chr5 (32-96)||(6030500-6030564)
chr5 (117-180)||(7271788-7271851)
chr5 (14-176)||(41355620-41355772)
chr5 (14-68)||(42221396-42221450)
chr5 (302-371)||(4300661-4300730)
chr5 (302-371)||(12164255-12164324)
chr5 (302-371)||(27553491-27553560)
chr5 (307-371)||(41003967-41004031)
[»] chr4 (21 HSPs)
chr4 (14-184)||(45873110-45873280)
chr4 (18-185)||(55728704-55728871)
chr4 (20-135)||(42677627-42677742)
chr4 (14-125)||(12130522-12130633)
chr4 (14-183)||(38093223-38093393)
chr4 (302-371)||(21391073-21391142)
chr4 (14-65)||(14441123-14441174)
chr4 (14-184)||(47518552-47518712)
chr4 (302-371)||(28093214-28093283)
chr4 (302-371)||(45829375-45829444)
chr4 (302-371)||(46192363-46192432)
chr4 (302-371)||(49243819-49243888)
chr4 (14-96)||(34227172-34227254)
chr4 (302-371)||(3672278-3672347)
chr4 (302-371)||(7217769-7217838)
chr4 (107-180)||(23054338-23054411)
chr4 (33-177)||(24957685-24957819)
chr4 (302-371)||(44275710-44275779)
chr4 (302-342)||(43245522-43245562)
chr4 (14-139)||(53202127-53202241)
chr4 (14-86)||(12489182-12489254)
[»] chr7 (21 HSPs)
chr7 (18-189)||(21590510-21590682)
chr7 (14-135)||(31039008-31039129)
chr7 (23-129)||(24718022-24718127)
chr7 (302-371)||(7700001-7700070)
chr7 (302-371)||(7700199-7700268)
chr7 (302-371)||(7700397-7700466)
chr7 (302-371)||(7700595-7700664)
chr7 (14-96)||(3302436-3302518)
chr7 (18-124)||(43047689-43047794)
chr7 (302-371)||(36346682-36346751)
chr7 (304-371)||(13108154-13108221)
chr7 (304-371)||(23980137-23980204)
chr7 (302-371)||(42221081-42221150)
chr7 (304-371)||(31148296-31148363)
chr7 (302-371)||(26972321-26972390)
chr7 (302-371)||(28307613-28307682)
chr7 (302-363)||(34108430-34108491)
chr7 (304-371)||(5811281-5811348)
chr7 (302-371)||(30887704-30887773)
chr7 (16-72)||(36582839-36582894)
chr7 (303-371)||(38321014-38321082)
[»] chr6 (10 HSPs)
chr6 (14-133)||(32747641-32747760)
chr6 (304-371)||(14022940-14023007)
chr6 (302-371)||(3118165-3118234)
chr6 (302-371)||(3987023-3987092)
chr6 (304-371)||(24208450-24208517)
chr6 (43-122)||(30845463-30845542)
chr6 (302-360)||(13697573-13697630)
chr6 (14-72)||(9566804-9566861)
chr6 (14-70)||(11366700-11366755)
chr6 (107-175)||(21881411-21881479)
[»] chr8 (17 HSPs)
chr8 (14-96)||(15050124-15050206)
chr8 (14-135)||(25142910-25143031)
chr8 (16-86)||(23635861-23635931)
chr8 (85-185)||(15050070-15050170)
chr8 (23-92)||(5515298-5515367)
chr8 (302-371)||(12665348-12665417)
chr8 (302-371)||(30432343-30432412)
chr8 (302-371)||(36189220-36189289)
chr8 (16-96)||(10408713-10408793)
chr8 (14-96)||(5994493-5994575)
chr8 (302-367)||(44081784-44081849)
chr8 (42-185)||(6443925-6444057)
chr8 (19-67)||(23635816-23635864)
chr8 (304-371)||(33726017-33726084)
chr8 (14-55)||(3763043-3763084)
chr8 (302-371)||(10203668-10203737)
chr8 (302-371)||(42162602-42162671)
[»] chr3 (17 HSPs)
chr3 (14-122)||(31699226-31699333)
chr3 (248-301)||(37067076-37067129)
chr3 (302-371)||(21559565-21559634)
chr3 (302-371)||(38231297-38231366)
chr3 (302-371)||(46112062-46112131)
chr3 (17-96)||(18269875-18269954)
chr3 (302-371)||(22894684-22894753)
chr3 (302-371)||(29460664-29460733)
chr3 (302-371)||(29471516-29471585)
chr3 (302-371)||(36749410-36749479)
chr3 (304-369)||(39072393-39072458)
chr3 (304-371)||(39467219-39467286)
chr3 (302-371)||(36370456-36370525)
chr3 (302-371)||(43999993-44000062)
chr3 (129-187)||(31699315-31699373)
chr3 (306-371)||(20856269-20856334)
chr3 (128-184)||(18269807-18269863)
[»] scaffold0092 (1 HSPs)
scaffold0092 (112-188)||(23272-23348)
[»] scaffold0027 (1 HSPs)
scaffold0027 (14-90)||(2946-3021)
[»] scaffold0062 (1 HSPs)
scaffold0062 (302-371)||(6722-6791)
[»] scaffold0044 (1 HSPs)
scaffold0044 (77-163)||(42826-42912)
[»] scaffold0725 (1 HSPs)
scaffold0725 (31-72)||(1080-1121)
[»] scaffold0088 (1 HSPs)
scaffold0088 (31-72)||(26996-27037)
[»] scaffold0043 (1 HSPs)
scaffold0043 (302-371)||(87282-87350)
[»] scaffold0157 (1 HSPs)
scaffold0157 (14-86)||(31223-31295)


Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-165; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 17 - 371
Target Start/End: Original strand, 29099536 - 29099889
Alignment:
Q  17 ccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcat 116  Q
    |||||||||||| ||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29099536 ccattaaccaccacaaaaaccatcgttaatactcaccaaaaactagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcat 29099635  T
Q  117 caccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccacaaaagacccagtgtcagaaaataactcttga 216  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29099636 caccaccaagaaccaccacgagcaccaccacagaagacccagtatcagcaccaccatggaaaccaccacaaaagacccagtgtcagaaaataactcttga 29099735  T
Q  217 ggagagttacgttataactccaagctggcggaccccaaccataattcttgcaaagtaacccatgttttgtagctcgagctggcggtcttatacataaacc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29099736 ggagagttacgttataactccaagctggcggaccccaaccataattcttgcaaagtaactcatgttttgtagctcgagctggcggtcttatacataaacc 29099835  T
Q  317 atcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    | |||||||| ||||||||| ||||||  ||||||||||||||||||||| ||||    
T  29099836 accttagatggcatacactc-tttacgtccacacacatttgtgacatgtgacaaa 29099889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 14 - 185
Target Start/End: Original strand, 15495877 - 15496048
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 113  Q
    |||| ||||||||||   ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| || |||| ||    
T  15495877 ctactattaaccaccaagaaaaccaccattaatcctcaccaaaaaccagcaccagccaccacgagcatcaccaccaaaaaacaacatcagccaccacgag 15495976  T
Q  114 catcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccac 185  Q
    |||||||||||| |||||||||||||| || |||| |||||| |||||||||||||||||||||||||||||    
T  15495977 catcaccaccaaaaaccaccacgagcaccaccacaaaagaccaagtatcagcaccaccatgaaaaccaccac 15496048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 14351218 - 14351048
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 113  Q
    |||||| |||||||| ||||||||||| ||||| |||||||||||||||||||| |||| || |||||||||||||||||| |||| || || |||| ||    
T  14351218 ctaccactaaccaccacaaaaaccaccattaattctcaccaaaaaccagcaccaaccaccactagcatcaccaccaaaaactaacaccagccaccacgag 14351119  T
Q  114 catcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccac 185  Q
    ||||||||  || |||||||||||| | || |||| || | ||| ||||| ||||| |||||||||||||||    
T  14351118 catcaccataaaaaaccaccacgagaaccaccacaaaaaatccaatatcaacacca-catgaaaaccaccac 14351048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 11814700 - 11814779
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaa 93  Q
    ||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  11814700 ctaccattaaccatcacaaaaaccaccattaatcctcaccaaaaaccagcaccagccaccatgagcatcaccaccaaaaa 11814779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 2077523 - 2077418
Alignment:
Q  18 cattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatc 117  Q
    ||||||||||| ||||||||||| ||||||||||||||||| | | ||||||||| ||||||||||||| |||||| ||||| || || |||  ||||||    
T  2077523 cattaaccaccacaaaaaccaccattaatcctcaccaaaaatcggtaccagccaccacgagcatcacca-caaaaatcaacaccagccaccatgagcatc 2077425  T
Q  118 accacca 124  Q
    |||||||    
T  2077424 accacca 2077418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 85 - 177
Target Start/End: Complemental strand, 26842092 - 26842000
Alignment:
Q  85 caccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaa 177  Q
    ||||||||||||||| || || |||| ||||||| |||||| || ||||||||||| || |||| |||||||||||||| |||||||||||||    
T  26842092 caccaaaaaccaacaccagccaccacgagcatcaacaccaaaaatcaccacgagcaccaccacaaaagacccagtatcaacaccaccatgaaa 26842000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 26842127 - 26842049
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaa 93  Q
    ||||||||||||||| ||||| | ||| |||||||||||||||||||| |||||||||| |||||||||| |||||||||    
T  26842127 ctaccattaaccaccacaaaa-caaccattaatcctcaccaaaaaccaacaccagccaccacgagcatcaacaccaaaaa 26842049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 371
Target Start/End: Original strand, 2509028 - 2509097
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||| ||||| ||||| |||||||||  ||||||| | ||||||||||||||||| ||||||||    
T  2509028 tcttatacatgaaccaccttaggtgacatacatccttttacacccacacacatttgtgacacgtggcaaa 2509097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 371
Target Start/End: Complemental strand, 34307325 - 34307256
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||||||||| ||||| || ||||||| |||||||   ||||||||||||||||| ||||||||    
T  34307325 tcttatacataaaccaccttaggtggcatacacccttttacatccacacacatttgtgacacgtggcaaa 34307256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 371
Target Start/End: Complemental strand, 39250050 - 39249981
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||| ||||||||||| || ||||||| ||||||| | || |||||||||||||| ||||||||    
T  39250050 tcttatacatgaaccatcttaggtggcatacacccttttacacccatacacatttgtgacacgtggcaaa 39249981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 8039197 - 8039259
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacga 77  Q
    |||||||||||||||  ||||||||||  |||||||||||||||||||||| ||||||| ||||    
T  8039197 ctaccattaaccacca-aaaaaccaccagtaatcctcaccaaaaaccagcatcagccaccacga 8039259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 129 - 188
Target Start/End: Original strand, 10494882 - 10494941
Alignment:
Q  129 ccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccacaaa 188  Q
    |||||||||||| || |||| |||||||| ||||| ||||||||||||||||| ||||||    
T  10494882 ccaccacgagcaccaacacaaaagacccaatatcaacaccaccatgaaaaccatcacaaa 10494941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 26236824 - 26236753
Alignment:
Q  113 gcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccacca 184  Q
    |||||||||| || |||||||||||||| || |||| ||||| ||  |||||||||| ||||||||||||||    
T  26236824 gcatcaccactaaaaaccaccacgagcaccaccacaaaagactcaaaatcagcaccatcatgaaaaccacca 26236753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 304 - 371
Target Start/End: Complemental strand, 19258857 - 19258790
Alignment:
Q  304 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    ||||||||||||||||| || || |||||||  |||||| | |||| | |||||||||||||||||||    
T  19258857 ttatacataaaccatctaaggtggcatacacctttttacacccacatatatttgtgacatgtggcaaa 19258790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 615641 - 615723
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaacca 96  Q
    |||||||| ||| || |||||  |||| |||| | |||| ||||| || |||||||||| ||| |||||||||||||||||||    
T  615641 ctaccattgaccgccacaaaaggcaccattaaccatcactaaaaagcaacaccagccaccacgcgcatcaccaccaaaaacca 615723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 34654839 - 34654920
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaacc 95  Q
    |||||||| |||||| |||||| |||| |||| ||||||| |||| || ||| |||||| ||  ||| ||||||||||||||    
T  34654839 ctaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaacacaagccaccacacgcagcaccaccaaaaacc 34654920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 2077419 - 2077379
Alignment:
Q  145 cacagaagacccagtatcagcaccaccatgaaaaccaccac 185  Q
    |||| |||||||||||||| |||||||||| ||||||||||    
T  2077419 cacaaaagacccagtatcaacaccaccatggaaaccaccac 2077379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 371
Target Start/End: Original strand, 10146971 - 10147039
Alignment:
Q  303 cttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||  |||| ||||| || ||||||| |||| || | |||||||| |||||||||||||||||    
T  10146971 cttatacatggaccaccttaggtggcatacaccctttgacccccacacacaattgtgacatgtggcaaa 10147039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 39709234 - 39709190
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaa 58  Q
    ||||||||||||||| |||||| |||| |||| ||||||||||||    
T  39709234 ctaccattaaccaccacaaaaatcaccattaaccctcaccaaaaa 39709190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 6e-53; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 14 - 187
Target Start/End: Original strand, 6705509 - 6705682
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 113  Q
    ||||||||||||| | | ||||||||| |||||||||||||||||||| ||||| |||| |||||||||||||||||||| ||||| || || |||| ||    
T  6705509 ctaccattaaccaacacgaaaaccaccattaatcctcaccaaaaaccaacaccaaccaccacgagcatcaccaccaaaaaacaacaccagccaccacgag 6705608  T
Q  114 catcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccacaa 187  Q
    |||||||||||| |||||||||||||| || |||| |||||| |||||||||||||||||||||||||||||||    
T  6705609 catcaccaccaaaaaccaccacgagcaccaccacaaaagaccaagtatcagcaccaccatgaaaaccaccacaa 6705682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 45 - 188
Target Start/End: Original strand, 40900224 - 40900367
Alignment:
Q  45 atcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccaccacgagcatcat 144  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||  || |||  || ||||||||||| | |||||||||||| ||     
T  40900224 atcctcaccaaaaaccagcaccagccaccacgagcatcaccacaaaaaaccagcatctgccaccatgagtatcaccaccaaaagccaccacgagcaccac 40900323  T
Q  145 cacagaagacccagtatcagcaccaccatgaaaaccaccacaaa 188  Q
    |||| ||||||||||||||||||||||||  |||||||||||||    
T  40900324 cacaaaagacccagtatcagcaccaccatagaaaccaccacaaa 40900367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 33 - 188
Target Start/End: Complemental strand, 38531433 - 38531278
Alignment:
Q  33 aaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccac 132  Q
    |||||| | ||||||||||| |||||||||||||| |||| || |||||||| ||||||||| |||| || || |||| || |||||| |||| || |||    
T  38531433 aaaccatcattaatcctcacaaaaaaccagcaccatccaccactagcatcacaaccaaaaactaacaccagccaccacgagtatcaccgccaaaaatcac 38531334  T
Q  133 cacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccacaaa 188  Q
    |||||||| || |||| || |||||||||||||||||||||| ||| |||||||||    
T  38531333 cacgagcaccaccacaaaaaacccagtatcagcaccaccatggaaaacaccacaaa 38531278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 14 - 140
Target Start/End: Complemental strand, 14950879 - 14950753
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 113  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||| ||  ||||||||| || |||||||||||||||||  |||| || ||||||| ||    
T  14950879 ctaccattaaccaccacaaaaaccaccattaatcctcaccaaaaatcaataccagccaccactagcatcaccaccaaaaaataacaccagccgccacgag 14950780  T
Q  114 catcaccaccaagaaccaccacgagca 140  Q
    |||||||||||| || |||||| ||||    
T  14950779 catcaccaccaaaaatcaccacaagca 14950753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 14 - 124
Target Start/End: Original strand, 9910631 - 9910740
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 113  Q
    ||||||||||||||| ||||||||||  |||||||| |||||||| || |||||||||| ||||| ||||||| |||||||||||| || || |||| ||    
T  9910631 ctaccattaaccaccacaaaaaccacaattaatccttaccaaaaatcaacaccagccaccacgagtatcacca-caaaaaccaacaccaaccaccacgag 9910729  T
Q  114 catcaccacca 124  Q
    |||||||||||    
T  9910730 catcaccacca 9910740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 34 - 135
Target Start/End: Complemental strand, 28164938 - 28164837
Alignment:
Q  34 aaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccacc 133  Q
    ||||||| ||| |||||||| |||| ||||||||||||| ||||| |||||||||||||||||||| || || |||  |||||||||||||| |||||||    
T  28164938 aaccaccattactcctcaccgaaaatcagcaccagccaccacgagtatcaccaccaaaaaccaacaccaaccaccatgagcatcaccaccaaaaaccacc 28164839  T
Q  134 ac 135  Q
    ||    
T  28164838 ac 28164837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 4869516 - 4869598
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaacca 96  Q
    |||||||| |||||| ||||||||||| |||| | |||| ||||| || |||||||||| ||| |||||||||||||||||||    
T  4869516 ctaccattgaccaccacaaaaaccaccattaaccatcactaaaaagcaacaccagccaccacgcgcatcaccaccaaaaacca 4869598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 302 - 371
Target Start/End: Original strand, 33732573 - 33732642
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||||||||||||||||||    
T  33732573 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaa 33732642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 302 - 371
Target Start/End: Original strand, 36315565 - 36315634
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||||||||||||||||||    
T  36315565 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaa 36315634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 302 - 371
Target Start/End: Original strand, 44958117 - 44958186
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||||||||||||||||||    
T  44958117 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaa 44958186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 304 - 371
Target Start/End: Complemental strand, 37914421 - 37914354
Alignment:
Q  304 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||||||| ||||| || ||||||| |||||||   ||||||||||||||||||||||||||    
T  37914421 ttatacataaaccaccttaggtggcatacacccttttacatccacacacatttgtgacatgtggcaaa 37914354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 371
Target Start/End: Complemental strand, 37499052 - 37498983
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    ||||||| || ||||||||||  || ||||||  ||||||| ||||||||||||||||||||||||||||    
T  37499052 tcttatatatcaaccatcttaactggcatacatccttttacactcacacacatttgtgacatgtggcaaa 37498983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 1551859 - 1551698
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 113  Q
    |||||||| |||||| |||||| |||| |||| ||||||| |||| || |||||||||| ||| ||| ||||| | |||||||          |||||||    
T  1551859 ctaccattgaccacctcaaaaatcaccattaaccctcacctaaaagcaacaccagccaccacgcgcagcaccatccaaaacca----------ccacaag 1551770  T
Q  114 catcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccac 185  Q
    |||||||||| | |||||||||||||  |  |||  ||||||||  |||||||| |||| ||||||||||||    
T  1551769 catcaccacccaaaaccaccacgagccccgccactaaagacccaaaatcagcactaccaagaaaaccaccac 1551698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 107 - 183
Target Start/End: Original strand, 3921536 - 3921612
Alignment:
Q  107 ccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccacc 183  Q
    ||||||||||||||||||| |||||||||||||  |  |||| | ||||||  ||||||||||||| ||||||||||    
T  3921536 ccacaagcatcaccaccaaaaaccaccacgagccccgccacaaatgacccaaaatcagcaccaccaagaaaaccacc 3921612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 304 - 368
Target Start/End: Complemental strand, 6376418 - 6376354
Alignment:
Q  304 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggc 368  Q
    |||||||||||||| | ||| || ||||||| ||||||| | |||||||||||||||||||||||    
T  6376418 ttatacataaaccaccataggtggcatacacccttttacacccacacacatttgtgacatgtggc 6376354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 17282206 - 17282046
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 113  Q
    |||||||| |||||| |||||| |||| |||| ||||||| |||| ||  |||| |||| ||| ||| ||||||| |||||||          ||||||     
T  17282206 ctaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaaaccaaccaccacgcgcagcaccacccaaaacca----------ccacaaa 17282117  T
Q  114 catcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccacca 184  Q
    |||||||||||| ||||||||||||   |  |||| ||||||||  ||||||||||||| |||||||||||    
T  17282116 catcaccaccaaaaaccaccacgagtcccgccacaaaagacccaaaatcagcaccaccaagaaaaccacca 17282046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 27888778 - 27888824
Alignment:
Q  31 aaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacga 77  Q
    |||||||||| ||||||||||||||||| ||||||||||||| ||||    
T  27888778 aaaaaccaccattaatcctcaccaaaaatcagcaccagccaccacga 27888824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 371
Target Start/End: Original strand, 16089826 - 16089895
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||| ||||| ||||  || ||||||| ||||||| | ||||||||||||||||| ||||||||    
T  16089826 tcttatacatgaaccaccttaagtggcatacacccttttacacccacacacatttgtgacacgtggcaaa 16089895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 107 - 180
Target Start/End: Original strand, 34660230 - 34660303
Alignment:
Q  107 ccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaacc 180  Q
    ||||||| | ||||||||| ||||||||||||| ||  |||| || |||||  |||||||||||||||||||||    
T  34660230 ccacaagaaccaccaccaaaaaccaccacgagcctcgccacaaaacacccaaaatcagcaccaccatgaaaacc 34660303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 184
Target Start/End: Original strand, 1895351 - 1895431
Alignment:
Q  104 ccgccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccacca 184  Q
    |||||| ||||||||||||||| |||||||||||||  |  |||| ||||||||  ||||  ||||||| |||||||||||    
T  1895351 ccgccataagcatcaccaccaaaaaccaccacgagccccgccacaaaagacccaaaatcaataccaccaagaaaaccacca 1895431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 371
Target Start/End: Complemental strand, 3831081 - 3831015
Alignment:
Q  303 cttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    ||||||||| ||||| ||||| |||||||||| ||||||| | ||||||  ||||||||| ||||||||    
T  3831081 cttatacatgaaccaccttaggtgacatacacccttttacacccacaca--tttgtgacacgtggcaaa 3831015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 371
Target Start/End: Original strand, 14572999 - 14573068
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||||||||| ||||| || ||| ||| |||||||   ||||||||||||||||| || |||||    
T  14572999 tcttatacataaaccaccttaggtggcatccacccttttacatccacacacatttgtgacacgtagcaaa 14573068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 9e-49; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 14 - 184
Target Start/End: Original strand, 40680874 - 40681044
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 113  Q
    ||||||||||||||| | ||||||||| |||||||||||||||||||||||||| |||| | |||||||||||||||||| |||||||| || |||| ||    
T  40680874 ctaccattaaccaccacgaaaaccaccattaatcctcaccaaaaaccagcaccaaccaccatgagcatcaccaccaaaaaacaacatcagccaccacgag 40680973  T
Q  114 catcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccacca 184  Q
    |||||||||||| |||||||| ||||| || |||| |||||| ||||||| ||||||||| ||||||||||    
T  40680974 catcaccaccaaaaaccaccatgagcaccaccacaaaagaccaagtatcaacaccaccataaaaaccacca 40681044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 26331261 - 26331090
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 113  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||| |||||||| ||| ||||||||||||||| ||||||||||||| || |||| ||    
T  26331261 ctaccattaaccaccacaaaaaccaccattaatcctcaccaaaaacaagcaccagacaccacgagcatcaccacctaaaaccaacatcagccaccacgag 26331162  T
Q  114 catcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccac 185  Q
    |||||||||||| ||| |  |||  || || |||| ||||| || ||||| |||||||||  ||||||||||    
T  26331161 catcaccaccaaaaactattacggacaccaccacaaaagactcaatatcaacaccaccatagaaaccaccac 26331090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 21 - 135
Target Start/End: Original strand, 12156370 - 12156484
Alignment:
Q  21 taaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatcacc 120  Q
    |||||||| ||||||||| | ||||| ||||||||||||||||||||||||| || |||||||||||||||||| |||| || || ||||||||||||||    
T  12156370 taaccaccacaaaaaccatcattaattctcaccaaaaaccagcaccagccaccactagcatcaccaccaaaaactaacaccagccaccacaagcatcacc 12156469  T
Q  121 accaagaaccaccac 135  Q
    | ||| |||||||||    
T  12156470 atcaaaaaccaccac 12156484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 14 - 163
Target Start/End: Complemental strand, 24867249 - 24867100
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 113  Q
    ||||||||||||| | ||||||||||| |||||||||||||||||  |||||||||||| |||||||||  ||||||||| |  ||  | || |||| ||    
T  24867249 ctaccattaaccaacacaaaaaccaccattaatcctcaccaaaaattagcaccagccaccacgagcatcctcaccaaaaatcggcactagccaccacgag 24867150  T
Q  114 catcaccaccaagaaccaccacgagcatcatcacagaagacccagtatca 163  Q
      |||||||||| |||||||||||||| || || | ||||||||||||||    
T  24867149 tctcaccaccaaaaaccaccacgagcaccaccataaaagacccagtatca 24867100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 14 - 125
Target Start/End: Complemental strand, 34574272 - 34574162
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 113  Q
    ||||||||||||||| ||||| ||||| ||| |||||||||||||||| ||| |||||| |||||||||||||||||||| ||||| || || | || ||    
T  34574272 ctaccattaaccaccacaaaa-ccaccattactcctcaccaaaaaccaacactagccaccacgagcatcaccaccaaaaatcaacaccagccactacgag 34574174  T
Q  114 catcaccaccaa 125  Q
    ||||||||||||    
T  34574173 catcaccaccaa 34574162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 27170325 - 27170243
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaacca 96  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||| || |||||||||| ||| ||| |||||||||||||||    
T  27170325 ctaccattaaccaccacaaaaaccaccattaatcctcaccaaaaagcaacaccagccaccacgcgcagcaccaccaaaaacca 27170243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 23 - 124
Target Start/End: Complemental strand, 42268936 - 42268836
Alignment:
Q  23 accaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatcaccac 122  Q
    |||||| ||||||||||| ||||||||||||||||| ||| ||||||||| ||||||||||||| | |||||||||| || || |||| |||||||||||    
T  42268936 accaccacaaaaaccaccattaatcctcaccaaaaatcagaaccagccaccacgagcatcacca-cgaaaaccaacaccagccaccacgagcatcaccac 42268838  T
Q  123 ca 124  Q
    ||    
T  42268837 ca 42268836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 302 - 371
Target Start/End: Complemental strand, 40888129 - 40888060
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||||||||| ||||| || ||||||||||||||| | ||||||||||||||||| ||||||||    
T  40888129 tcttatacataaaccaccttaggtggcatacactcttttacacccacacacatttgtgacacgtggcaaa 40888060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 40600035 - 40599972
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacga 77  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||| || |||||||||| ||||    
T  40600035 ctaccattaaccaccacaaaaaccaccattaatcctcaccaaaaatcaacaccagccaccacga 40599972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 176
Target Start/End: Original strand, 26656639 - 26656790
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 113  Q
    |||||||| |||||| ||||| ||||| |||| | |||| ||||| || |||||||||| ||| |||||||||||||||||||          |||||||    
T  26656639 ctaccattgaccaccacaaaa-ccaccattaaccatcactaaaaagcaacaccagccaccacgcgcatcaccaccaaaaacca----------ccacaag 26656727  T
Q  114 catcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaa 176  Q
    || ||||||||| ||||||||||||| ||  |||| || | |||  |||||||||||||||||    
T  26656728 caccaccaccaaaaaccaccacgagcctcgccacaaaacaaccaaaatcagcaccaccatgaa 26656790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 176
Target Start/End: Original strand, 26928226 - 26928377
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 113  Q
    |||||||| |||||| ||||| ||||| |||| | |||| ||||| || |||||||||| ||| |||||||||||||||||||          |||||||    
T  26928226 ctaccattgaccaccacaaaa-ccaccattaaccatcactaaaaagcaacaccagccaccacgcgcatcaccaccaaaaacca----------ccacaag 26928314  T
Q  114 catcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaa 176  Q
    || ||||||||| ||||||||||||| ||  |||| || | |||  |||||||||||||||||    
T  26928315 caccaccaccaaaaaccaccacgagcctcgccacaaaacaaccaaaatcagcaccaccatgaa 26928377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 371
Target Start/End: Complemental strand, 1815803 - 1815734
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||| ||||||||||| |||||||||| |||||||   |||||| |||||||||| ||||||||    
T  1815803 tcttatacatgaaccatcttaggtgacatacacccttttacatccacacatatttgtgacacgtggcaaa 1815734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 371
Target Start/End: Complemental strand, 9408226 - 9408157
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||| ||||| || || |||||||| | ||||||| ||||||||||||||||||| ||||||||    
T  9408226 tcttatacatgaaccacctcaggtgacatacgcccttttacactcacacacatttgtgacacgtggcaaa 9408157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 371
Target Start/End: Complemental strand, 33404623 - 33404554
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||||||||| ||||||||    
T  33404623 tcttatacatgaaccaccttaggtgccatacacacttttacacccacacacatttgtgacacgtggcaaa 33404554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 371
Target Start/End: Original strand, 39370931 - 39371000
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||| ||||| |||||||| ||||||| ||||||| | ||||||||||||||||| ||| ||||    
T  39370931 tcttatacatgaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtgccaaa 39371000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 371
Target Start/End: Original strand, 13347134 - 13347201
Alignment:
Q  304 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||||||||| ||||||||    
T  13347134 ttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaa 13347201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 7271718 - 7271792
Alignment:
Q  15 taccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccacca 89  Q
    ||||||| |||||| ||||||||||| |||| | |||| ||||| || |||||||||| ||| ||||||||||||    
T  7271718 taccattgaccaccacaaaaaccaccattaaccatcactaaaaagcaacaccagccaccacgcgcatcaccacca 7271792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 6030564 - 6030500
Alignment:
Q  32 aaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaacca 96  Q
    ||||||||| |||| | |||| ||||| || |||||||||| ||| |||||||||||||||||||    
T  6030564 aaaaccaccattaaccatcactaaaaagcaacaccagccaccacgcgcatcaccaccaaaaacca 6030500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 7271788 - 7271851
Alignment:
Q  117 caccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaacc 180  Q
    ||||||||| ||||||||||||| ||  |||| || |||||  |||||||||||||||||||||    
T  7271788 caccaccaaaaaccaccacgagcctcgccacaaaacacccaaaatcagcaccaccatgaaaacc 7271851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 14 - 176
Target Start/End: Complemental strand, 41355772 - 41355620
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 113  Q
    |||||||| |||||| |||||| |||| |||| ||||||| |||| || |||||||||| ||   || ||||||| |||||||          |||||||    
T  41355772 ctaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaacaccagccaccacacacaacaccacccaaaacca----------ccacaag 41355683  T
Q  114 catcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaa 176  Q
    ||| |||||||| |||||| ||||||  |  |||| ||||||||  |||||||||||||||||    
T  41355682 cataaccaccaaaaaccactacgagccccgccacaaaagacccaaaatcagcaccaccatgaa 41355620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 42221396 - 42221450
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccag 68  Q
    ||||||||||||||| |||||| |||| ||| || |||||||| |||||||||||    
T  42221396 ctaccattaaccaccacaaaaatcaccattactcgtcaccaaagaccagcaccag 42221450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 371
Target Start/End: Complemental strand, 4300730 - 4300661
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||| |||||| |||| ||||||| |  ||||||| | |||||| ||||||||||| |||||||    
T  4300730 tcttatacatgaaccattttaggtgacatatatccttttacacccacacatatttgtgacatatggcaaa 4300661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 371
Target Start/End: Original strand, 12164255 - 12164324
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||| ||||||||||| || || ||| ||||| |  |||||||||| ||||| |||||||||||    
T  12164255 tcttatacatgaaccatcttaggtggcacacattctttaatactcacacacagttgtggcatgtggcaaa 12164324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 371
Target Start/End: Complemental strand, 27553560 - 27553491
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||| |||||| |||| || |||| ||  |||||| | ||||||||||||||||| ||||||||    
T  27553560 tcttatacatgaaccattttaggtggcatataccattttacacccacacacatttgtgacacgtggcaaa 27553491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 371
Target Start/End: Complemental strand, 41004031 - 41003967
Alignment:
Q  307 tacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    ||||| |||||  |||| || ||||||| ||||||| |||| |||||||| ||||||||||||||    
T  41004031 tacatgaaccactttaggtggcatacacccttttacactcatacacatttatgacatgtggcaaa 41003967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 5e-44; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 14 - 184
Target Start/End: Original strand, 45873110 - 45873280
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 113  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||| |||||||  ||| |||||||||||||  ||||||||||| || || |||| ||    
T  45873110 ctaccattaaccaccacaaaaaccaccattaatcctcaccaaaaacaagcaccaaacaccacgagcatcaccataaaaaaccaacaccagccaccacgag 45873209  T
Q  114 catcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccacca 184  Q
    |||||||||||| ||||||||||| || || |||| |||||||| ||| | ||||||||||||||||||||    
T  45873210 catcaccaccaaaaaccaccacgaacaccaccacaaaagacccaatattaacaccaccatgaaaaccacca 45873280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 55728704 - 55728871
Alignment:
Q  18 cattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatc 117  Q
    ||||||||||| ||||||||||| |||||||||||||||||| || ||||||||| || |||||||||||||||||| |||| |  || |||| ||||||    
T  55728704 cattaaccaccacaaaaaccaccattaatcctcaccaaaaactagtaccagccaccactagcatcaccaccaaaaactaacaccggccaccacgagcatc 55728803  T
Q  118 accaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccac 185  Q
    |||| ||| || ||||||||||| || |||| || |  |||||||| |||||||||| ||||||||||    
T  55728804 accatcaaaaatcaccacgagcaccaccacaaaaaattcagtatcaacaccaccatggaaaccaccac 55728871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 20 - 135
Target Start/End: Complemental strand, 42677742 - 42677627
Alignment:
Q  20 ttaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatcac 119  Q
    ||||||||| ||||||||||| ||||||||||| |||||| |||||||| ||| |||||||||||||||||||| ||||| || || |||||||||||||    
T  42677742 ttaaccaccacaaaaaccaccattaatcctcactaaaaacaagcaccagacaccacgagcatcaccaccaaaaatcaacaccagccaccacaagcatcac 42677643  T
Q  120 caccaagaaccaccac 135  Q
    | |||| |||||||||    
T  42677642 cgccaaaaaccaccac 42677627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 14 - 125
Target Start/End: Original strand, 12130522 - 12130633
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 113  Q
    |||||||| |||||| ||||||| | | ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||| || |||| |     
T  12130522 ctaccattgaccaccacaaaaactatcattaatcctcaccaaaaaccagcaccagccaccacgagcatcaccaccaaaacccaaaatcagccaccacgac 12130621  T
Q  114 catcaccaccaa 125  Q
    ||||||||||||    
T  12130622 catcaccaccaa 12130633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 14 - 183
Target Start/End: Original strand, 38093223 - 38093393
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 113  Q
    |||||| |||||||| |||||| |||| | |||||||||||||||||| ||||| | || || |||||||||||||||||| |||| || || |||| ||    
T  38093223 ctaccaataaccaccacaaaaaacaccataaatcctcaccaaaaaccatcaccatctaccactagcatcaccaccaaaaactaacaccagccaccacgag 38093322  T
Q  114 catcaccacc-aagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccacc 183  Q
    ||||||| || || |||||||||||| | || |||| || ||||||||||| |||||||||  ||||||||    
T  38093323 catcaccgccaaaaaaccaccacgagtaccaccacaaaaaacccagtatcaacaccaccatagaaaccacc 38093393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 302 - 371
Target Start/End: Complemental strand, 21391142 - 21391073
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||| ||||| |||||||| ||||||| ||||||| | ||||||||||||||||| ||||||||    
T  21391142 tcttatacatgaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtggcaaa 21391073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 14441123 - 14441174
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcac 65  Q
    ||||||||||||| | ||||||||||| ||||||||||||||||||||||||    
T  14441123 ctaccattaaccagcacaaaaaccaccattaatcctcaccaaaaaccagcac 14441174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 47518712 - 47518552
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 113  Q
    |||||||| |||||| |||||| |||  |||| ||||||| |||| || |||||||||| |||||||  |||||| |||||||          ||||||     
T  47518712 ctaccattgaccaccacaaaaatcactattaaccctcacctaaaagcaacaccagccaccacgagcagtaccacccaaaacca----------ccacaaa 47518623  T
Q  114 catcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccacca 184  Q
    |||||||||||| ||||||||||||| | | |||| |||| |||  ||||||| ||||| |||||||||||    
T  47518622 catcaccaccaaaaaccaccacgagccttaccacaaaagatccaaaatcagcaacaccaagaaaaccacca 47518552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 371
Target Start/End: Complemental strand, 28093283 - 28093214
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||||||||| ||||||||    
T  28093283 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaa 28093214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 371
Target Start/End: Complemental strand, 45829444 - 45829375
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||| |||||  |||| ||||||||||  |||||| | ||||||||||||||||||||||||||    
T  45829444 tcttatacatgaaccactttaggtgacatacacctttttacacccacacacatttgtgacatgtggcaaa 45829375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 371
Target Start/End: Original strand, 46192363 - 46192432
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||| || || ||||| || ||||||| ||||||| | ||||||||||||||||||||||||||    
T  46192363 tcttatacatgaatcaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaa 46192432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 371
Target Start/End: Original strand, 49243819 - 49243888
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||| ||||| ||||| || ||||||| |||||||   ||||||||||||||||||||||||||    
T  49243819 tcttatacatgaaccaccttaggtggcatacacccttttacatccacacacatttgtgacatgtggcaaa 49243888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 34227254 - 34227172
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaacca 96  Q
    |||||||| |||| | | ||||||||| |||| ||||||| |||| || |||||||||| ||| ||||||||||| |||||||    
T  34227254 ctaccattgaccatcacgaaaaccaccattaaccctcacctaaaagcaacaccagccaccacgcgcatcaccacccaaaacca 34227172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 371
Target Start/End: Original strand, 3672278 - 3672347
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||| ||||| ||||| || ||||||| |||||||   ||||||||||||||||| ||||||||    
T  3672278 tcttatacatgaaccaccttaggtggcatacacccttttacatccacacacatttgtgacacgtggcaaa 3672347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 371
Target Start/End: Original strand, 7217769 - 7217838
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||||||||| ||||| || ||||||| |||| || |  |||||||||||||||| ||||||||    
T  7217769 tcttatacataaaccaccttaggtggcatacaccctttaacacctacacacatttgtgacacgtggcaaa 7217838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 107 - 180
Target Start/End: Complemental strand, 23054411 - 23054338
Alignment:
Q  107 ccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaacc 180  Q
    ||||||||| ||||||||| ||||| |||||||  |  |||| ||||||||  |||||||||||||||||||||    
T  23054411 ccacaagcaccaccaccaaaaaccatcacgagctccgccacaaaagacccaaaatcagcaccaccatgaaaacc 23054338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 177
Target Start/End: Complemental strand, 24957819 - 24957685
Alignment:
Q  33 aaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccac 132  Q
    |||| ||| |||| |||||||||||| || |||||||||| ||  |||||||||||||||||||          |||| |||| ||||  ||| || |||    
T  24957819 aaactaccattaaccctcaccaaaaaacaacaccagccaccacatgcatcaccaccaaaaacca----------ccacgagcaccaccgtcaaaaatcac 24957730  T
Q  133 cacgagcatcatcacagaagacccagtatcagcaccaccatgaaa 177  Q
    |||||||| ||||||| |||| |||  ||||||||||||||||||    
T  24957729 cacgagcaccatcacaaaagaaccaaaatcagcaccaccatgaaa 24957685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 371
Target Start/End: Original strand, 44275710 - 44275779
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||||||||| ||||| || |||| ||  |||||| ||||||||||||||||||| ||| ||||    
T  44275710 tcttatacataaaccaccttaggtggcatataccattttacactcacacacatttgtgacacgtgccaaa 44275779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 342
Target Start/End: Original strand, 43245522 - 43245562
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttac 342  Q
    |||||||||| |||||||||||||||||||||| |||||||    
T  43245522 tcttatacatgaaccatcttagatgacatacacccttttac 43245562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 139
Target Start/End: Original strand, 53202127 - 53202241
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 113  Q
    |||||||| |||||| |||||| |||| |||| ||||||| |||| || |||||||||| ||| ||| ||| ||| |||||||          |||||||    
T  53202127 ctaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaacaccagccaccacgcgcagcac-acctaaaacca----------ccacaag 53202215  T
Q  114 catcaccaccaagaaccaccacgagc 139  Q
    |||||||||||| |||||||||||||    
T  53202216 catcaccaccaaaaaccaccacgagc 53202241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 12489254 - 12489182
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcacca 86  Q
    ||||||||||||||| |||||| |||| |||| | |||| |||  ||| ||||| |||| |||||||||||||    
T  12489254 ctaccattaaccaccacaaaaatcaccattaaccatcacaaaagtccaccaccacccaccacgagcatcacca 12489182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 21590682 - 21590510
Alignment:
Q  18 cattaaccaccccaaaaa-ccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcat 116  Q
    ||||||||||| |||||| ||||| ||| | ||||  |||||||| |||||| ||| |||||||||||||| |||||||||||||| || |||||||| |    
T  21590682 cattaaccaccacaaaaaaccaccattagttctcaaaaaaaaccaacaccagtcaccacgagcatcaccacaaaaaaccaacatcagccaccacaagcgt 21590583  T
Q  117 caccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccacaaaa 189  Q
    ||||| ||| |||||||||||||  || |||| |||||||| |||||||||||||||  |||| |||||||||    
T  21590582 caccatcaaaaaccaccacgagccccaccacaaaagacccaatatcagcaccaccatagaaactaccacaaaa 21590510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 14 - 135
Target Start/End: Original strand, 31039008 - 31039129
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 113  Q
    ||||||||||||||| ||||||||||| ||| |||||||| |||| ||||||||||||| ||||| |||||||||||||||||||| || || |||  ||    
T  31039008 ctaccattaaccaccacaaaaaccaccattactcctcaccgaaaatcagcaccagccaccacgagtatcaccaccaaaaaccaacaccaaccaccatgag 31039107  T
Q  114 catcaccaccaagaaccaccac 135  Q
    ||||||||| || |||||||||    
T  31039108 catcaccactaaaaaccaccac 31039129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 23 - 129
Target Start/End: Original strand, 24718022 - 24718127
Alignment:
Q  23 accaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatcaccac 122  Q
    |||||| ||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||   |||||||||| || || |||| |||||||||||    
T  24718022 accaccacaaaaaccaccattaatcctcaccaaaaatcagcaccagccaccacgagcatcacca-tgaaaaccaacaccaaccaccacgagcatcaccac 24718120  T
Q  123 caagaac 129  Q
    || ||||    
T  24718121 catgaac 24718127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 302 - 371
Target Start/End: Complemental strand, 7700070 - 7700001
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||||||||| |||||||| ||||||| ||||||| | ||||||||||||||||| ||||||||    
T  7700070 tcttatacataaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtggcaaa 7700001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 302 - 371
Target Start/End: Complemental strand, 7700268 - 7700199
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||||||||| |||||||| ||||||| ||||||| | ||||||||||||||||| ||||||||    
T  7700268 tcttatacataaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtggcaaa 7700199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 302 - 371
Target Start/End: Complemental strand, 7700466 - 7700397
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||||||||| |||||||| ||||||| ||||||| | ||||||||||||||||| ||||||||    
T  7700466 tcttatacataaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtggcaaa 7700397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 302 - 371
Target Start/End: Complemental strand, 7700664 - 7700595
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||||||||| |||||||| ||||||| ||||||| | ||||||||||||||||| ||||||||    
T  7700664 tcttatacataaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtggcaaa 7700595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 3302436 - 3302518
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaacca 96  Q
    |||||||| |||||| ||||||||||| ||||  ||||||||||| || |||||||||| ||| ||| |||||||||||||||    
T  3302436 ctaccattgaccaccacaaaaaccaccattaacactcaccaaaaagcaacaccagccaccacgcgcagcaccaccaaaaacca 3302518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 43047794 - 43047689
Alignment:
Q  18 cattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatc 117  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||||||| |||| |||| ||| |||| | |||||||||| || || |||| ||||||    
T  43047794 cattaaccaccacaaaaaccaccattaatcctcacaaaaaatcagcaccaaccaccacgaacattacca-cgaaaaccaacaccagccaccacgagcatc 43047696  T
Q  118 accacca 124  Q
    | |||||    
T  43047695 atcacca 43047689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 302 - 371
Target Start/End: Complemental strand, 36346751 - 36346682
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||||||||||||||| || ||||||| ||||||| | || |||||||||||||| ||||||||    
T  36346751 tcttatacataaaccatcttaggtggcatacacccttttacacccagacacatttgtgacacgtggcaaa 36346682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 304 - 371
Target Start/End: Original strand, 13108154 - 13108221
Alignment:
Q  304 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||||||| |||||  | ||||||| ||||||| | ||||||||||||||||||||||||||    
T  13108154 ttatacataaaccaccttaggcggcatacacccttttacacccacacacatttgtgacatgtggcaaa 13108221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 304 - 371
Target Start/End: Original strand, 23980137 - 23980204
Alignment:
Q  304 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||||||| | ||| || ||||||| ||||||| | ||||||||||||||||||||||||||    
T  23980137 ttatacataaaccaccataggtggcatacacccttttacacccacacacatttgtgacatgtggcaaa 23980204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 371
Target Start/End: Complemental strand, 42221150 - 42221081
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||| ||||| ||||| || |||||||| |||||| | ||||||||||||||||| ||||||||    
T  42221150 tcttatacatgaaccaccttaggtggcatacacttttttacacccacacacatttgtgacacgtggcaaa 42221081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 371
Target Start/End: Original strand, 31148296 - 31148363
Alignment:
Q  304 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||| ||||||||||| || ||||||| ||||||| | |||||||||||||||||  |||||||    
T  31148296 ttatacatgaaccatcttaggtggcatacacccttttacacccacacacatttgtgacacatggcaaa 31148363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 371
Target Start/End: Complemental strand, 26972390 - 26972321
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||| ||||| ||||||||    
T  26972390 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttatgacacgtggcaaa 26972321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 371
Target Start/End: Complemental strand, 28307682 - 28307613
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||||||| | ||||| || ||||||| ||||||| | |||||||||||| |||| ||||||||    
T  28307682 tcttatacataaactaccttaggtggcatacacccttttacacccacacacatttgcgacacgtggcaaa 28307613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 363
Target Start/End: Original strand, 34108430 - 34108491
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacat 363  Q
    |||||||||| ||||| ||||| |||||||||| ||||||| | |||||| |||||||||||    
T  34108430 tcttatacatgaaccaccttaggtgacatacacccttttacacccacacatatttgtgacat 34108491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 304 - 371
Target Start/End: Complemental strand, 5811348 - 5811281
Alignment:
Q  304 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||||||| | ||| || ||||||  ||||| | | ||||||||||||||||||||||||||    
T  5811348 ttatacataaaccaccataggtggcatacatcctttttcacccacacacatttgtgacatgtggcaaa 5811281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 371
Target Start/End: Original strand, 30887704 - 30887773
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||| ||| ||||||| || ||||||| ||||||| | |||| |||||||||||| || |||||    
T  30887704 tcttatacatgaacaatcttaggtggcatacacacttttacacccacatacatttgtgacacgtagcaaa 30887773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 36582839 - 36582894
Alignment:
Q  16 accattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccac 72  Q
    |||||||||||||  ||||||||||  ||||||||||||||||||| |||| |||||    
T  36582839 accattaaccacca-aaaaaccaccagtaatcctcaccaaaaaccaacacccgccac 36582894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 371
Target Start/End: Original strand, 38321014 - 38321082
Alignment:
Q  303 cttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    ||||||||| ||||||||||| || |||||||  ||| || | |||| ||| |||||||||||||||||    
T  38321014 cttatacattaaccatcttaggtggcatacacattttaacacccacatacaattgtgacatgtggcaaa 38321082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 7e-28; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 32747760 - 32747641
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 113  Q
    ||||||||||||||| ||||||||||| |||  |||||||||||| |||||| |||||| || ||||||||||||||||||||||| || || |||  ||    
T  32747760 ctaccattaaccaccacaaaaaccaccattacacctcaccaaaaatcagcactagccaccaccagcatcaccaccaaaaaccaacaccagccaccatgag 32747661  T
Q  114 catcaccaccaagaaccacc 133  Q
    |||||||||||| |||||||    
T  32747660 catcaccaccaaaaaccacc 32747641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 304 - 371
Target Start/End: Original strand, 14022940 - 14023007
Alignment:
Q  304 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||||||| ||||| || ||||||| ||||||| | ||||||||||||||||||||||||||    
T  14022940 ttatacataaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaa 14023007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 371
Target Start/End: Complemental strand, 3118234 - 3118165
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    ||||||| || ||||| ||||| || ||||||| ||||||| ||||||||||||||||||| ||||||||    
T  3118234 tcttatatatgaaccaccttaggtggcatacacccttttacactcacacacatttgtgacacgtggcaaa 3118165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 371
Target Start/End: Complemental strand, 3987092 - 3987023
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||||||||| ||||||||    
T  3987092 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaa 3987023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 371
Target Start/End: Original strand, 24208450 - 24208517
Alignment:
Q  304 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||||||||| ||| ||  ||||||| |||||| | ||||||||||||||| ||||||||||    
T  24208450 ttatacataaaccatcataggtggtatacactattttacacccacacacatttgtgatatgtggcaaa 24208517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 30845463 - 30845542
Alignment:
Q  43 taatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatcaccac 122  Q
    ||||||||||| ||||| |||||||||||  ||||||||||||| ||||||| |||| || || |||| |||| ||||||    
T  30845463 taatcctcaccgaaaacaagcaccagccaacacgagcatcaccatcaaaaactaacaccagccaccacgagcaccaccac 30845542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 302 - 360
Target Start/End: Original strand, 13697573 - 13697630
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtga 360  Q
    ||||||||||||||||||||||||||||| ||| ||||||| | || ||||||||||||    
T  13697573 tcttatacataaaccatcttagatgacatgcacccttttacac-catacacatttgtga 13697630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 9566804 - 9566861
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccac 72  Q
    |||||||||||||||  ||||||||||  ||||||||||||||||||| |||| |||||    
T  9566804 ctaccattaaccacca-aaaaaccaccaataatcctcaccaaaaaccaacacccgccac 9566861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 11366700 - 11366755
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagcc 70  Q
    |||||||||||||||  ||||||||||  | |||||||||||||||||||| |||||    
T  11366700 ctaccattaaccacca-aaaaaccaccaatgatcctcaccaaaaaccagcatcagcc 11366755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 21881411 - 21881479
Alignment:
Q  107 ccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatga 175  Q
    ||||||||| ||||||||| ||||||||||||   ||  ||| ||||||||  ||||||||||||||||    
T  21881411 ccacaagcaccaccaccaaaaaccaccacgagtcccacaacaaaagacccaaaatcagcaccaccatga 21881479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 15050206 - 15050124
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaacca 96  Q
    ||||||||||||||| ||||||||| | |||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  15050206 ctaccattaaccaccacaaaaaccatcattaatcctcaccaaaaactagcaccagccaccacgagcatcaccaccaaaaacca 15050124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 14 - 135
Target Start/End: Original strand, 25142910 - 25143031
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 113  Q
    ||||||||||||||| |||||| ||||  || |||||||| |||| ||||||||||||| ||||| |||||||||||||| ||||| || || |||  ||    
T  25142910 ctaccattaaccaccacaaaaatcaccactactcctcaccgaaaatcagcaccagccaccacgagtatcaccaccaaaaatcaacaccaaccaccatgag 25143009  T
Q  114 catcaccaccaagaaccaccac 135  Q
    |||||||||||| |||||||||    
T  25143010 catcaccaccaaaaaccaccac 25143031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 23635861 - 23635931
Alignment:
Q  16 accattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcacca 86  Q
    |||||||||| || ||||||||||| ||||||||||||||||| ||||||||||| | |||||||||||||    
T  23635861 accattaacctccacaaaaaccaccattaatcctcaccaaaaatcagcaccagcctccacgagcatcacca 23635931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 85 - 185
Target Start/End: Complemental strand, 15050170 - 15050070
Alignment:
Q  85 caccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccacca 184  Q
    |||||||||| | || || || |||| |||||||||||||| |||||||||||||| || |||| |||||| |||| ||||||||||||  |||||||||    
T  15050170 caccaaaaactagcaccagccaccacgagcatcaccaccaaaaaccaccacgagcaccaccacaaaagacctagtaccagcaccaccattgaaaccacca 15050071  T
Q  185 c 185  Q
    |    
T  15050070 c 15050070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 5515298 - 5515367
Alignment:
Q  23 accaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaa 92  Q
    |||||| ||||||||||| ||||||||||||||||| |||||||| |||| |||||||||| ||| ||||    
T  5515298 accaccacaaaaaccaccattaatcctcaccaaaaatcagcaccaaccaccacgagcatcatcacgaaaa 5515367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 302 - 371
Target Start/End: Original strand, 12665348 - 12665417
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| ||||||||||||||| ||||||||||||    
T  12665348 tcttatacatgaaccaccttaggtggcatacacccttttacactcacacacatttgtaacatgtggcaaa 12665417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 371
Target Start/End: Original strand, 30432343 - 30432412
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||| ||||| |||||||| ||||||| ||||||  | ||||||||||||||||| ||||||||    
T  30432343 tcttatacatgaaccaccttagatggcatacacccttttatacccacacacatttgtgacacgtggcaaa 30432412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 371
Target Start/End: Original strand, 36189220 - 36189289
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||| ||||||||||| || ||||||| ||||||| | |||| |||||||||||| ||||||||    
T  36189220 tcttatacatgaaccatcttaggtggcatacacccttttacacccacatacatttgtgacacgtggcaaa 36189289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 10408713 - 10408793
Alignment:
Q  16 accattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaacca 96  Q
    |||||| |||||| ||||||||||| ||||  |||||| |||| || |||||||||| ||| ||| |||||||||||||||    
T  10408713 accattgaccaccacaaaaaccaccattaactctcacctaaaagcaacaccagccaccacgcgcagcaccaccaaaaacca 10408793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 5994493 - 5994575
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaacca 96  Q
    ||||||||||||||| |||||| |||| |||| ||||||||||||  | ||||| |||| ||| ||| |||||| ||||||||    
T  5994493 ctaccattaaccaccacaaaaatcaccattaaccctcaccaaaaaataacaccaaccaccacgcgcagcaccacaaaaaacca 5994575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 367
Target Start/End: Original strand, 44081784 - 44081849
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtgg 367  Q
    |||||||||| ||||||||||| || ||||||| ||||||| | ||||||||||||| ||| ||||    
T  44081784 tcttatacatgaaccatcttaggtggcatacacccttttacacccacacacatttgtaacacgtgg 44081849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 185
Target Start/End: Original strand, 6443925 - 6444057
Alignment:
Q  42 ttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccaccacgagcat 141  Q
    |||| ||||| |||||| || || ||||||| | |||||||||||||||||||||          |||| |||| ||||||||| ||||||  ||||||     
T  6443925 ttaaccctcatcaaaaaacaacaacagccaccatgagcatcaccaccaaaaacca----------ccacgagcaccaccaccaa-aaccacttcgagcac 6444013  T
Q  142 catcacagaagacccagtatcagcaccaccatgaaaaccaccac 185  Q
    || |||| ||||||||  |||||| |||||||||||||||||||    
T  6444014 caccacaaaagacccaaaatcagccccaccatgaaaaccaccac 6444057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 23635816 - 23635864
Alignment:
Q  19 attaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcacca 67  Q
    ||||||| || ||||||||||| ||||||||||||||||| ||||||||    
T  23635816 attaacctccacaaaaaccaccattaatcctcaccaaaaatcagcacca 23635864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 304 - 371
Target Start/End: Original strand, 33726017 - 33726084
Alignment:
Q  304 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    ||||||||||||||  |||| || |||||||  |||||| | |||| |||||||||||||||||||||    
T  33726017 ttatacataaaccactttaggtggcatacacctttttacacccacaaacatttgtgacatgtggcaaa 33726084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 3763084 - 3763043
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaa 55  Q
    ||||||||||||||| ||||||||| | ||||||||||||||    
T  3763084 ctaccattaaccaccacaaaaaccatcattaatcctcaccaa 3763043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 371
Target Start/End: Original strand, 10203668 - 10203737
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||| ||||| ||||| |||||||||  |||||||   ||||||||||||||||| ||| ||||    
T  10203668 tcttatacatgaaccaccttaggtgacatacatccttttacatccacacacatttgtgacacgtgacaaa 10203737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 371
Target Start/End: Original strand, 42162602 - 42162671
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | || |||||||||||||| ||| ||||    
T  42162602 tcttatacatgaaccaccttaggtgtcatacacccttttacacccaaacacatttgtgacacgtgacaaa 42162671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 31699226 - 31699333
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 113  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||| | | |||||||||| || || |||| ||    
T  31699226 ctaccattaaccaccacaaaaaccaccattaatcctcaccaaaaatcagcaccagccaccacgagcatcacta-cgaaaaccaacaccagccaccacgag 31699324  T
Q  114 catcaccac 122  Q
    || ||||||    
T  31699325 caccaccac 31699333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 248 - 301
Target Start/End: Original strand, 37067076 - 37067129
Alignment:
Q  248 accccaaccataattcttgcaaagtaacccatgttttgtagctcgagctggcgg 301  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37067076 accccaaccataattcttgcaaagtaacccatgttttgtagctccagctggcgg 37067129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 302 - 371
Target Start/End: Original strand, 21559565 - 21559634
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||||||||||||||| || ||||||| ||||||| | ||||||||||||||||| ||||||||    
T  21559565 tcttatacataaaccatcttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaa 21559634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 302 - 371
Target Start/End: Original strand, 38231297 - 38231366
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||||||||||||||||||    
T  38231297 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaa 38231366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 302 - 371
Target Start/End: Complemental strand, 46112131 - 46112062
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||| ||||||||||| ||||||||||  ||||||   ||||||||||||||||||||||||||    
T  46112131 tcttatacatgaaccatcttaggtgacatacaccattttacatccacacacatttgtgacatgtggcaaa 46112062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 18269954 - 18269875
Alignment:
Q  17 ccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaacca 96  Q
    ||||| |||||| ||||||||||| |||| | |||| ||||| || |||||||||| ||| |||||||||||||||||||    
T  18269954 ccattgaccaccacaaaaaccaccattaaccatcactaaaaaacaacaccagccaccacgcgcatcaccaccaaaaacca 18269875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 371
Target Start/End: Original strand, 22894684 - 22894753
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||||||||| ||||||||    
T  22894684 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaa 22894753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 371
Target Start/End: Original strand, 29460664 - 29460733
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||| ||||||||||||||||||    
T  29460664 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacttttgtgacatgtggcaaa 29460733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 371
Target Start/End: Original strand, 29471516 - 29471585
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||| ||||||||||||||||||    
T  29471516 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacttttgtgacatgtggcaaa 29471585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 371
Target Start/End: Original strand, 36749410 - 36749479
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||| ||||| |||||||| |||||||  |||||| | ||||||||||||||||| ||||||||    
T  36749410 tcttatacatgaaccaccttagatgtcatacacctttttacacccacacacatttgtgacacgtggcaaa 36749479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 304 - 369
Target Start/End: Complemental strand, 39072458 - 39072393
Alignment:
Q  304 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggca 369  Q
    |||||||| || || |||||||||||||||| ||||||| | |||| |||||||||||||||||||    
T  39072458 ttatacatgaatcaccttagatgacatacacccttttacacccacatacatttgtgacatgtggca 39072393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 371
Target Start/End: Complemental strand, 39467286 - 39467219
Alignment:
Q  304 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||| ||||||||| | |||||||||||||| ||||||| | |||||| |||||||||||||| ||||    
T  39467286 ttatccataaaccaccatagatgacatacacccttttacacccacacatatttgtgacatgtgccaaa 39467219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 371
Target Start/End: Complemental strand, 36370525 - 36370456
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||| ||||| ||||| || |||||||  |||||| | ||||||||||||||||||||| ||||    
T  36370525 tcttatacatgaaccaccttaggtgtcatacacctttttacacccacacacatttgtgacatgtgacaaa 36370456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 371
Target Start/End: Original strand, 43999993 - 44000062
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||| ||||| ||||| || |||||||  |||||| | ||||||||||||||||| ||||||||    
T  43999993 tcttatacatgaaccaccttaggtgtcatacacctttttacacccacacacatttgtgacacgtggcaaa 44000062  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 31699315 - 31699373
Alignment:
Q  129 ccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccacaa 187  Q
    |||||||||||| || |||| |||||||| || || |||||||||| ||||||||||||    
T  31699315 ccaccacgagcaccaccacaaaagacccaataccaacaccaccatggaaaccaccacaa 31699373  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 371
Target Start/End: Complemental strand, 20856334 - 20856269
Alignment:
Q  306 atacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||| |||||  |||| || ||||||| ||||||| | || |||||||||||||||||||||||    
T  20856334 atacatgaaccactttaggtggcatacacccttttacacccatacacatttgtgacatgtggcaaa 20856269  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 18269863 - 18269807
Alignment:
Q  128 accaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccacca 184  Q
    ||||||||||||  || |||| ||||||||  |||| ||||||||||||||||||||    
T  18269863 accaccacgagccccaccacaaaagacccaaaatcaacaccaccatgaaaaccacca 18269807  T

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Target: scaffold0092 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 112 - 188
Target Start/End: Original strand, 23272 - 23348
Alignment:
Q  112 agcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccacaaa 188  Q
    |||||||| ||||| |||||||||||||| || |||| |||||| |||||||||||||||||| |||||||||||||    
T  23272 agcatcacaaccaaaaaccaccacgagcaccaccacaaaagacctagtatcagcaccaccatggaaaccaccacaaa 23348  T

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Target: scaffold0027 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 2946 - 3021
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaa 90  Q
    ||||||||||||||| ||||| | ||| ||| |||||||||||||||||||||| |||| |||||| ||||||||||    
T  2946 ctaccattaaccaccacaaaatc-accattactcctcaccaaaaaccagcaccaaccaccacgagcttcaccaccaa 3021  T

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Target: scaffold0062 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 371
Target Start/End: Original strand, 6722 - 6791
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||||||||| ||||||||    
T  6722 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaa 6791  T

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Target: scaffold0044 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 163
Target Start/End: Complemental strand, 42912 - 42826
Alignment:
Q  77 agcatcaccaccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatca 163  Q
    |||||||||||||||||| |||| |||||  |||  |||||||| |||| |||||||||||| | || |||| || ||| |||||||    
T  42912 agcatcaccaccaaaaactaacaccatccatcacgcgcatcaccgccaaaaaccaccacgagtaccaccacaaaaaacctagtatca 42826  T

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Target: scaffold0725 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0725
Description:

Target: scaffold0725; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 1080 - 1121
Alignment:
Q  31 aaaaaccaccgttaatcctcaccaaaaaccagcaccagccac 72  Q
    ||||||||||  |||||||||||||||||||||||| |||||    
T  1080 aaaaaccaccagtaatcctcaccaaaaaccagcacccgccac 1121  T

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Target: scaffold0088 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 26996 - 27037
Alignment:
Q  31 aaaaaccaccgttaatcctcaccaaaaaccagcaccagccac 72  Q
    ||||||||||  |||||||||||||||||||||||| |||||    
T  26996 aaaaaccaccagtaatcctcaccaaaaaccagcacccgccac 27037  T

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Target: scaffold0043 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 371
Target Start/End: Complemental strand, 87350 - 87282
Alignment:
Q  302 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaa 371  Q
    |||||||||| ||||| ||||| || ||||||| ||| ||| | ||||||||||||||||| ||||||||    
T  87350 tcttatacatgaaccaccttaggtggcatacacccttgtacac-cacacacatttgtgacacgtggcaaa 87282  T

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Target: scaffold0157 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 31223 - 31295
Alignment:
Q  14 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcacca 86  Q
    ||||||||||||||| |||||| |||| |||| | |||| |||  ||| ||||| |||| |||||||||||||    
T  31223 ctaccattaaccaccacaaaaatcaccattaaccatcacaaaagtccaccaccacccaccacgagcatcacca 31295  T

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