View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17748_low_8 (Length: 387)
Name: NF17748_low_8
Description: NF17748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17748_low_8 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 20 - 387
Target Start/End: Complemental strand, 13138197 - 13137830
Alignment:
| Q |
20 |
tcagatacacaaacctttgatttacatacttacaagttacaatgggaaatgcttacagcagccgcaattccaaccttggcatcaattgtccttgttttaa |
119 |
Q |
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| T |
13138197 |
tcagatacacaaacctttgatttacatacttacaagttacaatgggaaatgcttacagcagccgcaattccaaccttggcatcaattgtccttgttttat |
13138098 |
T |
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| Q |
120 |
atcggctcccaccggtaccagggcactatgggtaaactcccttgaggtttccatgagcaattggaaagacgaccaaacagaaacttggggtgtacgttac |
219 |
Q |
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| T |
13138097 |
atcggctcccaccggtaccagggcactatgggtaaactcccttgaggtttccatgagcaattggaaagacgaccaaacagaaacttggggtgtacgttac |
13137998 |
T |
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| Q |
220 |
aaagtaggtaagaaattagagcatggttgttgttttcaactggaagcgagacacgacaacaatggtgttgagagtatatattttggattaagcaacgacg |
319 |
Q |
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| T |
13137997 |
aaagtaggtaagaaattagagcatggttgttgttttcaactggaagcgagacacgacaacaatggtgttgagagtatatattttggattaagggacgacg |
13137898 |
T |
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| Q |
320 |
atgcagatatcacatctgctttttctttggatatcaaaagggttgggagtgattatcttcatggaggg |
387 |
Q |
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| T |
13137897 |
atgcagatatcacatctgcttttactttggatatcaaaagggttgggagtgattatcttcatggaggg |
13137830 |
T |
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