View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17748_low_9 (Length: 362)
Name: NF17748_low_9
Description: NF17748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17748_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 22 - 356
Target Start/End: Original strand, 42387041 - 42387375
Alignment:
| Q |
22 |
aaccgcggaggagctacaagacctagagaagaaattcgccgcatatgttcgcaacgatgtgtacgggacgatgggaagaggagagttaggagccaaggag |
121 |
Q |
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| T |
42387041 |
aaccgcggaggagctacaagacctagagaagaaattcgccgcatatgttcgcaacgatgtgtacgggacgatgggaagaggagagttaggagccaaggag |
42387140 |
T |
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| Q |
122 |
aagcttttccttggtttcgcgcttgtgactcttcttccgattagagtgattcttgctgtaacggttttggttgtttattatgtggtttgtagggtttgta |
221 |
Q |
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| T |
42387141 |
aagcttttccttggtttcgcgcttgtgactcttcttccgattagagtgattcttgctgtaacggttttggttgtttattatgtggtttgtagggtttgta |
42387240 |
T |
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| Q |
222 |
cactgtttaaaattcctaatcgtgaagatgaacaagaggattatgctcatttgggtgggtggagaagaagtgttattgttaagtgtgggaaagctctttc |
321 |
Q |
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| T |
42387241 |
cactgtttaaaattcctaatcgtgaagatgaacaagaggattatgctcatttgggtgggtggagaagaagtgttattgttaagtgtgggaaagctctttc |
42387340 |
T |
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| Q |
322 |
tagagttatgcttttcatttttggattttcttgga |
356 |
Q |
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| T |
42387341 |
tagagttatgcttttcatttttggattttattgga |
42387375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 336
Target Start/End: Original strand, 6743863 - 6744011
Alignment:
| Q |
188 |
ttggttgtttattatgtggtttgtagggtttgtacactgtttaaaattcctaatcgtgaagatgaacaagaggattatgctcatttgggtgggtggagaa |
287 |
Q |
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| T |
6743863 |
ttggttttgtattatttgatttgtagggtttgtacggttttttctgttcctaatagggaagatgaacaagaggattatgctcatgttgttggttggagaa |
6743962 |
T |
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| Q |
288 |
gaagtgttattgttaagtgtgggaaagctctttctagagttatgctttt |
336 |
Q |
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| T |
6743963 |
gggttgttattgttcagtgtgggaaaatgctttctagaattgtgctttt |
6744011 |
T |
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