View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17749_high_1 (Length: 439)
Name: NF17749_high_1
Description: NF17749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17749_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 13 - 422
Target Start/End: Original strand, 41472591 - 41472997
Alignment:
| Q |
13 |
tagataattcttcaacgtggagctcttgctactaaattgacacaacttgtacgcatttgaatcttgctatatttacaaagacatcatcataatcaatcga |
112 |
Q |
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| T |
41472591 |
tagataattcttcaacgtggagctcttgctactaaattgacacaacttgtacgcgtttgaatcttgctatatttacaaagacatc---ataatcaatcga |
41472687 |
T |
|
| Q |
113 |
ttaatataaatgcaaacacattctcaaaatctaaacctctaaaacagaaagtcattctcaatgtctgaagttctaaagcataaagtatcatggtttggtc |
212 |
Q |
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| T |
41472688 |
ttaatataaatgcaaacacattctcaatatctaaacctctaaaacagaaagtcgttctcaatgtctgaagttctaaagcataaagtatcatggtttggtc |
41472787 |
T |
|
| Q |
213 |
ctattcaccatatttgtcttagaaattagttaaagagcatagatggaaagatcattaaactcaatagtaannnnnnnnaacagtggttaatagaaacatg |
312 |
Q |
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| T |
41472788 |
ctattcaccgtatttgtcttagaaattagttaaagagcatagatggaaagatctttaaactcaatagtaatttttttgaacagtggttaatagaaacatg |
41472887 |
T |
|
| Q |
313 |
caattagatagacaattagaaatactaattgaggtgnnnnnnntaataagttgttttgcagcaaatgccaatgttcattgttgtccttataactttatgt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41472888 |
caattagatagacaattagaaatactaattgaggtgaaaaaaataataagttgttttgcagcaaatgccaatgttcattgttgtccttataactttatgt |
41472987 |
T |
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| Q |
413 |
atactagtag |
422 |
Q |
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| T |
41472988 |
atactagtag |
41472997 |
T |
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