View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17749_high_4 (Length: 390)

Name: NF17749_high_4
Description: NF17749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17749_high_4
NF17749_high_4
[»] chr1 (5 HSPs)
chr1 (74-370)||(46269494-46269784)
chr1 (74-382)||(48241628-48241936)
chr1 (1-51)||(5982398-5982448)
chr1 (141-317)||(14206720-14206896)
chr1 (171-215)||(45814546-45814590)
[»] chr7 (2 HSPs)
chr7 (213-382)||(1717823-1717992)
chr7 (172-324)||(6800215-6800367)
[»] chr4 (4 HSPs)
chr4 (222-349)||(53481157-53481284)
chr4 (116-197)||(53481284-53481365)
chr4 (172-249)||(12377475-12377552)
chr4 (150-329)||(48489673-48489852)
[»] scaffold0693 (2 HSPs)
scaffold0693 (116-197)||(58-139)
scaffold0693 (222-279)||(1-58)
[»] chr3 (4 HSPs)
chr3 (75-190)||(47746868-47746983)
chr3 (257-359)||(47746727-47746829)
chr3 (176-229)||(8753882-8753935)
chr3 (89-249)||(3160176-3160336)
[»] chr8 (3 HSPs)
chr8 (172-233)||(42452476-42452537)
chr8 (279-328)||(38246471-38246520)
chr8 (166-230)||(15863838-15863902)
[»] chr2 (3 HSPs)
chr2 (157-379)||(40366377-40366599)
chr2 (172-324)||(40368891-40369043)
chr2 (279-325)||(34116101-34116147)
[»] chr6 (1 HSPs)
chr6 (257-325)||(19249147-19249215)


Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 74 - 370
Target Start/End: Complemental strand, 46269784 - 46269494
Alignment:
Q  74 accgttacggatgaggtttcctcgtcttttttctttgacgttggaacaggagagtacggtgagggatatggagaggcgtggttgggggtttgatggcagg 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||| ||||||||| |||    
T  46269784 accgttacggatgaggtttcctcgtcttttttctttgacgttggaaaaggagagtacgacgagggatatggagaggcgtggttgggagtttgatggtagg 46269685  T
Q  174 gcgtgggtgtggagacgtcgattatttgtgtgggaggaggattctttgagggagtgttctctgttattatataacannnnnnngcaggaaactgttcatg 273  Q
    || |||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||       |||||||||||||| ||    
T  46269684 gcatgggtgtggagacgtcaattatttgcgtgggaggatgattctttgagggagtgttctctgttattatctaacatctttttgcaggaaactgttcgtg 46269585  T
Q  274 acaaatggcggtggctgttagatcccattcatggttactcggtgaggggagcctacacctttttgataagcaatggtgctatggtgaacaggtctag 370  Q
    |||||      |||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||| ||||||||||||||||||||    
T  46269584 acaaa------tggctgttagatcccattcatggttactcggtgaggggagtctacacctttttgtcaagcaatggcgctatggtgaacaggtctag 46269494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 74 - 382
Target Start/End: Original strand, 48241628 - 48241936
Alignment:
Q  74 accgttacggatgaggtttcctcgtcttttttctttgacgttggaacaggagagtacggtgagggatatggagaggcgtggttgggggtttgatggcagg 173  Q
    ||||||||||| ||||||||||||||||||   ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  48241628 accgttacggaggaggtttcctcgtcttttcaatttgacgatggaaaaggagagtacggtgagggatatggagaggcgtggttgggggtttgatggaagg 48241727  T
Q  174 gcgtgggtgtggagacgtcgattatttgtgtgggaggaggattctttgagggagtgttctctgttattatataacannnnnnngcaggaaactgttcatg 273  Q
    || ||||  ||||||||||| || |||| ||||||||||||||||||||  ||||||||| ||||||||  |||||       |||||||| || |||||    
T  48241728 gcatggggatggagacgtcgtttgtttgcgtgggaggaggattctttgaaagagtgttctttgttattagctaacattattttgcaggaaattgctcatg 48241827  T
Q  274 acaaatggcggtggctgttagatcccattcatggttactcggtgaggggagcctacacctttttgataagcaatggtgctatggtgaacaggtctagtgt 373  Q
    ||||||||| ||||||||||||||||||||||||||| || |||| | ||| |||||| ||||||| ||||||||| ||| ||||||||| ||||  |||    
T  48241828 acaaatggcagtggctgttagatcccattcatggttattcagtgaagagagtctacacttttttgacaagcaatggcgctttggtgaacatgtcttatgt 48241927  T
Q  374 tgatgatgt 382  Q
    |||||||||    
T  48241928 tgatgatgt 48241936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 5982448 - 5982398
Alignment:
Q  1 taaacaataaaaaatatatttgtaatccttgcaaatatatcacctgttact 51  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  5982448 taaacaataaaaaatatatttttaatccttgcaaatatatcaccttttact 5982398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 141 - 317
Target Start/End: Original strand, 14206720 - 14206896
Alignment:
Q  141 atggagaggcgtggttgggggtttgatggcagggcgtgggtgtggagacgtcgattatttgtgtgggaggaggattctttgagggagtgttctctgttat 240  Q
    |||||| | |||||||||||  || ||||  |||| || | ||||||||  || || |||| ||||||| |||| ||| ||||||| |||||||||||||    
T  14206720 atggagggtcgtggttggggaattaatggaggggcatgagagtggagactccgtttgtttgcgtgggagtaggagtctgtgagggaatgttctctgttat 14206819  T
Q  241 tatataacannnnnnngcaggaaactgttcatgacaaatggcggtggctgttagatcccattcatggttactcggtg 317  Q
    ||  |||||       |||||| | ||| || |||| |||||||||| ||||||| || |||||||| ||| |||||    
T  14206820 tacgtaacattgttttgcaggataatgtccaagacacatggcggtggatgttagaccctattcatgggtacacggtg 14206896  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 45814590 - 45814546
Alignment:
Q  171 agggcgtgggtgtggagacgtcgattatttgtgtgggaggaggat 215  Q
    |||||||||||||||||||| || || |||| |||||||||||||    
T  45814590 agggcgtgggtgtggagacgccgtttgtttgcgtgggaggaggat 45814546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 213 - 382
Target Start/End: Original strand, 1717823 - 1717992
Alignment:
Q  213 gattctttgagggagtgttctctgttattatataacannnnnnngcaggaaactgttcatgacaaatggcggtggctgttagatcccattcatggttact 312  Q
    ||||||||||||||||||||||||||||||| |||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1717823 gattctttgagggagtgttctctgttattatctaacatctttttgcaggaaactgttcatgacaaatggcggtggctgttagatcccattcatggttact 1717922  T
Q  313 cggtgaggggagcctacacctttttgataagcaatggtgctatggtgaacaggtctagtgttgatgatgt 382  Q
    |||||||||||| |||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||    
T  1717923 cggtgaggggagtctacacctttttgtcaagcaatggcgctatggtgaacaggtctagtgttgatgatgt 1717992  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 172 - 324
Target Start/End: Original strand, 6800215 - 6800367
Alignment:
Q  172 gggcgtgggtgtggagacgtcgattatttgtgtgggaggaggattctttgagggagtgttctctgttattatataacannnnnnngcaggaaactgttca 271  Q
    ||||||||||||||||||| || || |||| |||||||||||| | | |||||||| ||||| || ||||| ||||||       ||||||  ||||||     
T  6800215 gggcgtgggtgtggagacgccgtttgtttgcgtgggaggaggaatatgtgagggagcgttctttgctattacataacattgttttgcaggattctgttcg 6800314  T
Q  272 tgacaaatggcggtggctgttagatcccattcatggttactcggtgaggggag 324  Q
    ||| |  |||| |||| ||||||| ||| ||||||| ||| |||| |||||||    
T  6800315 tgatacttggcagtggttgttagaccccgttcatgggtacacggttaggggag 6800367  T

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Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 222 - 349
Target Start/End: Complemental strand, 53481284 - 53481157
Alignment:
Q  222 agggagtgttctctgttattatataacannnnnnngcaggaaactgttcatgacaaatggcggtggctgttagatcccattcatggttactcggtgaggg 321  Q
    ||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  53481284 agggagtgttctctgttattatataacatttttttgcaggaaactgttcatgacaaatggcggtggctgttagatcccattcatggttactcggtgaagg 53481185  T
Q  322 gagcctacacctttttgataagcaatgg 349  Q
    |||||| ||||||||||| |||||||||    
T  53481184 gagcctgcacctttttgacaagcaatgg 53481157  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 116 - 197
Target Start/End: Complemental strand, 53481365 - 53481284
Alignment:
Q  116 ggaacaggagagtacggtgagggatatggagaggcgtggttgggggtttgatggcagggcgtgggtgtggagacgtcgatta 197  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||| ||||    
T  53481365 ggaaaaggagagtacggtgagggatatggagaggcgtggttgggggtttgatggtggggcatgggtgtggagacgtcaatta 53481284  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 172 - 249
Target Start/End: Complemental strand, 12377552 - 12377475
Alignment:
Q  172 gggcgtgggtgtggagacgtcgattatttgtgtgggaggaggattctttgagggagtgttctctgttattatataaca 249  Q
    ||||||||||||||||||| || || |||| |||||||||||| ||| |||||||||||||| || ||||| ||||||    
T  12377552 gggcgtgggtgtggagacgccgtttgtttgcgtgggaggaggaatctgtgagggagtgttctttgctattacataaca 12377475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 150 - 329
Target Start/End: Complemental strand, 48489852 - 48489673
Alignment:
Q  150 cgtggttgggggtttgatggcagggcgtgggtgtggagacgtcgattatttgtgtgggaggaggattctttgagggagtgttctctgttattatataaca 249  Q
    |||||||||||  | |||||  |||||| || ||||||||||||||| |||| |||| ||||||| | | ||||| | ||||||||||| ||  ||||||    
T  48489852 cgtggttggggaatcgatggaggggcgtaggagtggagacgtcgattgtttgcgtggaaggaggagtttgtgaggaaatgttctctgttgttgcataaca 48489753  T
Q  250 nnnnnnngcaggaaactgttcatgacaaatggcggtggctgttagatcccattcatggttactcggtgaggggagcctac 329  Q
           |||||| ||| |||||||||  ||||||||| ||||||| || |  ||||||||| ||||| | |||||||||    
T  48489752 ttgttttgcaggatactattcatgacacttggcggtggatgttagacccaacccatggttacacggtgcgaggagcctac 48489673  T

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Target: scaffold0693 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: scaffold0693
Description:

Target: scaffold0693; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 116 - 197
Target Start/End: Complemental strand, 139 - 58
Alignment:
Q  116 ggaacaggagagtacggtgagggatatggagaggcgtggttgggggtttgatggcagggcgtgggtgtggagacgtcgatta 197  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||| ||||    
T  139 ggaaaaggagagtacggtgagggatatggagaggcgtggttgggggtttgatggtggggcatgggtgtggagacgtcaatta 58  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0693; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 222 - 279
Target Start/End: Complemental strand, 58 - 1
Alignment:
Q  222 agggagtgttctctgttattatataacannnnnnngcaggaaactgttcatgacaaat 279  Q
    ||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  58 agggagtgttctctgttattatataacatttttttgcaggaaactgttcatgacaaat 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 75 - 190
Target Start/End: Complemental strand, 47746983 - 47746868
Alignment:
Q  75 ccgttacggatgaggtttcctcgtcttttttctttgacgttggaacaggagagtacggtgagggatatggagaggcgtggttgggggtttgatggcaggg 174  Q
    ||||| ||||||| |||||||||  | |||  |||  |||||||| |||||||||||||||||||||||||||| ||||| |||||||| ||||| ||||    
T  47746983 ccgttgcggatgaagtttcctcgcttctttgattttgcgttggaaaaggagagtacggtgagggatatggagagtcgtgggtgggggttcgatggtaggg 47746884  T
Q  175 cgtgggtgtggagacg 190  Q
    ||||||||||||||||    
T  47746883 cgtgggtgtggagacg 47746868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 257 - 359
Target Start/End: Complemental strand, 47746829 - 47746727
Alignment:
Q  257 gcaggaaactgttcatgacaaatggcggtggctgttagatcccattcatggttactcggtgaggggagcctacacctttttgataagcaatggtgctatg 356  Q
    |||||| |||||||| | ||||||||||||| || || ||||||||||||| |||||| ||| |||||| || |||||| ||| ||||| ||| ||| ||    
T  47746829 gcaggacactgttcaagtcaaatggcggtggttgctaaatcccattcatggctactcgttgaagggagcttatacctttctgacaagcactggcgctttg 47746730  T
Q  357 gtg 359  Q
    |||    
T  47746729 gtg 47746727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 8753935 - 8753882
Alignment:
Q  176 gtgggtgtggagacgtcgattatttgtgtgggaggaggattctttgagggagtg 229  Q
    ||||||||||||||||||| | || || ||||||||||||  ||||||||||||    
T  8753935 gtgggtgtggagacgtcgactgttagtctgggaggaggatagtttgagggagtg 8753882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 249
Target Start/End: Complemental strand, 3160336 - 3160176
Alignment:
Q  89 gtttcctcgtcttttttctttgacgttggaacaggagagtacggtgagggatatggagaggcgtggttgggggtttgatggcagggcgtgggtgtggaga 188  Q
    ||||||||||||||||  |||| || ||||  ||||  |||||||| | |  |||||| |  ||||||||||  | |||||  ||| ||||| |||||||    
T  3160336 gtttcctcgtctttttgatttggcggtggataaggattgtacggtgggagggatggagggttgtggttggggaatcgatggaggggtgtgggagtggaga 3160237  T
Q  189 cgtcgattatttgtgtgggaggaggattctttgagggagtgttctctgttattatataaca 249  Q
    || ||||| |||| ||||||||| |||||  | || || ||||||||||| ||| ||||||    
T  3160236 cgacgattgtttgcgtgggaggaagattcagtaagagaatgttctctgttgttacataaca 3160176  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 42452476 - 42452537
Alignment:
Q  172 gggcgtgggtgtggagacgtcgattatttgtgtgggaggaggattctttgagggagtgttct 233  Q
    ||||||||||||||||||||||  |||||| |||||||||||| ||| ||||||||||||||    
T  42452476 gggcgtgggtgtggagacgtcgtctatttgcgtgggaggaggaatctgtgagggagtgttct 42452537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 328
Target Start/End: Complemental strand, 38246520 - 38246471
Alignment:
Q  279 tggcggtggctgttagatcccattcatggttactcggtgaggggagccta 328  Q
    |||||||||||||||||||| |||||||| || |||||| ||||| ||||    
T  38246520 tggcggtggctgttagatcctattcatggctattcggtgcggggatccta 38246471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 15863838 - 15863902
Alignment:
Q  166 atggcagggcgtgggtgtggagacgtcgattatttgtgtgggaggaggattctttgagggagtgt 230  Q
    |||||||||||||||||||||||||||| || ||||| | | |||||||   | |||||||||||    
T  15863838 atggcagggcgtgggtgtggagacgtcgtttgtttgtttcgaaggaggagagtgtgagggagtgt 15863902  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 379
Target Start/End: Complemental strand, 40366599 - 40366377
Alignment:
Q  157 gggggtttgatggcagggcgtgggtgtggagacgtcgattatttgtgtgggaggaggattctttgagggagtgttctctgttattatataacannnnnnn 256  Q
    ||||| |||||||  ||||||||| |||||||||| |  | ||||  |||||| |||| | | ||||||| |||||  ||||| || ||||||           
T  40366599 ggggggttgatggaggggcgtgggagtggagacgtgggctgtttgcctgggagaaggagtgtgtgagggaatgttccttgttactacataacattatttt 40366500  T
Q  257 gcaggaaactgttcatgacaaatggcggtggctgttagatcccattcatggttactcggtgaggggagcctacacctttttgataagcaatggtgctatg 356  Q
    |||||| |||||||  || |  ||||||||| || |||||||||||||||||||| |||||| |||||| |   |||||||||  |||| ||| | ||||    
T  40366499 gcaggatactgttccagatacttggcggtggttgctagatcccattcatggttacacggtgaagggagcatcttcctttttgactagcactggcgatatg 40366400  T
Q  357 gtgaacaggtctagtgttgatga 379  Q
    ||| ||||||| | |||||||||    
T  40366399 gtggacaggtccaatgttgatga 40366377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 172 - 324
Target Start/End: Complemental strand, 40369043 - 40368891
Alignment:
Q  172 gggcgtgggtgtggagacgtcgattatttgtgtgggaggaggattctttgagggagtgttctctgttattatataacannnnnnngcaggaaactgttca 271  Q
    |||| ||||| |||||||||||  | |||| |||||||||||| ||| ||||||||||| || || ||||| ||||||       ||||||  |||||||    
T  40369043 gggcatgggtatggagacgtcgtctgtttgcgtgggaggaggaatctgtgagggagtgtcctttgctattacataacattgttttgcaggattctgttca 40368944  T
Q  272 tgacaaatggcggtggctgttagatcccattcatggttactcggtgaggggag 324  Q
    ||| |  |||| |||| ||||||| ||| ||||||| ||| |||| |||||||    
T  40368943 tgatacttggcagtggttgttagaccccgttcatgggtacacggttaggggag 40368891  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 325
Target Start/End: Original strand, 34116101 - 34116147
Alignment:
Q  279 tggcggtggctgttagatcccattcatggttactcggtgaggggagc 325  Q
    ||||| ||| |||||||||| ||||| ||||||||||||||||||||    
T  34116101 tggcgttggttgttagatcctattcagggttactcggtgaggggagc 34116147  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 325
Target Start/End: Complemental strand, 19249215 - 19249147
Alignment:
Q  257 gcaggaaactgttcatgacaaatggcggtggctgttagatcccattcatggttactcggtgaggggagc 325  Q
    |||||||| |||||||||    ||||| |||||||||||||| ||||| |||||| |||||||||||||    
T  19249215 gcaggaaaatgttcatgatgcttggcgttggctgttagatcctattcagggttacacggtgaggggagc 19249147  T

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