View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17749_low_11 (Length: 345)
Name: NF17749_low_11
Description: NF17749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17749_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 335
Target Start/End: Complemental strand, 19889510 - 19889194
Alignment:
| Q |
17 |
acttcaagcatacaacaaatagtgtgtttacctcataaattcttgaactgcatcacaattgaacaagatgtaacggtgagcttgattctttgaattgcta |
116 |
Q |
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|||| |||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
19889510 |
acttaaagcctacaacaaa--gtgtgtttacctcataaatttttgaactgcatcacaattgaacaagatgtaacagtgagcttgattctttgaatttcta |
19889413 |
T |
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| Q |
117 |
tctaaataaattgcttcacccgttttctttcctccaataggatgaccaatatagggaaaaaagtatgaaccttcaacttcataaggatgacatttctcac |
216 |
Q |
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| T |
19889412 |
tctaaataaattgcttcaccctttttctttcctccaataggatgaccaatatagggaaaaaagtatgaaccttcaacttcataaggatgacatttctcac |
19889313 |
T |
|
| Q |
217 |
tattccttcgcattcgattaagccttgtctctacaccactattcaaataccttgcgcatagtgttaagccttcttcgactatgtatccttctgccataga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
19889312 |
tattccttcgcattcgattaagccttgtctctacaccactattcaaataccttgcgcatagtattaagccttcttcgactatgtatccttctgccataga |
19889213 |
T |
|
| Q |
317 |
accttctggatgacctttg |
335 |
Q |
| |
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|||||||||||||| |||| |
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| T |
19889212 |
accttctggatgacttttg |
19889194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 258
Target Start/End: Complemental strand, 19309728 - 19309544
Alignment:
| Q |
74 |
attgaacaagatgtaacggtgagcttgattctttgaattgctatctaaataaattgcttcacccgttttctttcctccaataggatgaccaa-tataggg |
172 |
Q |
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|||||| ||||||||||| ||||||||| || |||| |||| ||| ||| |||||||| |||| ||||||||||||| ||||||||||||| | ||| |
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| T |
19309728 |
attgaataagatgtaacgatgagcttgactccttgacttgcaatccaaagaaattgctccaccttttttctttcctcctataggatgaccaattctagaa |
19309629 |
T |
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| Q |
173 |
aaaaaagtatgaaccttcaacttcataaggatgacatttctcactattccttcgcattcgattaagccttgtctctacaccactat |
258 |
Q |
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| T |
19309628 |
aaagaaat-tggaccttcaagttcatcaggatgacacttatcgatattccttggcattctactaaaccttgtttcaacaccactat |
19309544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 74 - 167
Target Start/End: Complemental strand, 13252564 - 13252471
Alignment:
| Q |
74 |
attgaacaagatgtaacggtgagcttgattctttgaattgctatctaaataaattgcttcacccgttttctttcctccaataggatgaccaata |
167 |
Q |
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|||||| ||||||||||| |||||||||||| |||| |||| ||| ||| ||||| |||| || |||||||||||||| ||| ||||||||||| |
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| T |
13252564 |
attgaataagatgtaacgatgagcttgattccttgacttgcaatccaaagaaatttcttctcctgttttctttcctcccatatgatgaccaata |
13252471 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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