View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
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| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17749_low_12 (Length: 340)
Name: NF17749_low_12
Description: NF17749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17749_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 131 - 323
Target Start/End: Original strand, 6729294 - 6729486
Alignment:
| Q |
131 |
atagatcgatgtgttaacaatcggctgagtgaaatagccataggtttgggtttgcgaaagaggtacggtaaggggggtagtgtgatgaagtgataacagt |
230 |
Q |
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| T |
6729294 |
atagatcgatgtgttaacaatcggctgagtgaaatagccataggtttgggtttgtgaaagaggtacggtaaggggggtagtgtgatgaagtgataacggt |
6729393 |
T |
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| Q |
231 |
gtagagaaaggaataaaatttgttgaggtagagaatggggttgttgcagatccagtgaaaggtgatgagtttgtgtgggttagaggtagtgtg |
323 |
Q |
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| T |
6729394 |
gtagagaaaagaataaaatttgttgaggtagagaatggggttgttgcagatctagtgaagggtgatgagtttgtgtgggttagaggtagtgtg |
6729486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 6729197 - 6729282
Alignment:
| Q |
16 |
aatatggtggtgtttggtacttgggatagggtggtgtggagtaggaaaaattgtagtgtggaggagttgaaacggcgagactgaaa |
101 |
Q |
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| T |
6729197 |
aatatggtggtgtttggtacgtgggatagggtggtgtggagtaggaaaaattgtagtgtggaggagttgaaatggcgaaactgaaa |
6729282 |
T |
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