View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17749_low_13 (Length: 332)
Name: NF17749_low_13
Description: NF17749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17749_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 10 - 317
Target Start/End: Complemental strand, 42685863 - 42685555
Alignment:
| Q |
10 |
aagaatatgataaggagatagaaccctagaattttgaacgatcgaaaacaagcacctacgaaacccattagagaaaccacaaagaggaaaatgccgaaga |
109 |
Q |
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| T |
42685863 |
aagaataggataaggagatagaaccctagaattttgaacgatcgaaaacaagcacctacgaaacccattagagaaaccacaaagaggaaaatgccgaaga |
42685764 |
T |
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| Q |
110 |
gaataacatgtttttcgtacgaagcatcgcatgctgttttgacttcttctgttctccatgcttctaaacccaaattcaatactggaatggaaaccattag |
209 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42685763 |
gaataacatgtttttcatacgaagcatcgcatgctgttttgacttcttctgttctccatgcttctaaacccaaattcaatactggaatggaaaccattag |
42685664 |
T |
|
| Q |
210 |
agctaataagctaaggactccggtcaagatattgttgaattcactatcttcgtattg-nnnnnnngtttataatctatttccttgataccattgttgggt |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
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| T |
42685663 |
agctaataagctaaggactccggtcaagatattgttgaattcactatcttcgtattgttttttttgtttataatctatttccttgataccattgttggct |
42685564 |
T |
|
| Q |
309 |
agtttgaat |
317 |
Q |
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||||||||| |
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| T |
42685563 |
agtttgaat |
42685555 |
T |
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