View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17749_low_14 (Length: 312)

Name: NF17749_low_14
Description: NF17749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17749_low_14
NF17749_low_14
[»] chr5 (18 HSPs)
chr5 (18-290)||(9074616-9074885)
chr5 (18-284)||(8535448-8535714)
chr5 (18-290)||(8528887-8529156)
chr5 (18-140)||(1600193-1600313)
chr5 (57-130)||(8636968-8637041)
chr5 (57-122)||(8644321-8644386)
chr5 (57-122)||(8677923-8677988)
chr5 (59-132)||(2856824-2856897)
chr5 (59-132)||(2874434-2874507)
chr5 (65-122)||(2904938-2904995)
chr5 (38-122)||(8641480-8641564)
chr5 (59-132)||(2844997-2845070)
chr5 (171-284)||(8677752-8677865)
chr5 (18-89)||(8548002-8548073)
chr5 (185-254)||(8636844-8636913)
chr5 (175-227)||(8548141-8548193)
chr5 (180-219)||(1600338-1600377)
chr5 (171-254)||(8644189-8644272)
[»] chr7 (2 HSPs)
chr7 (18-228)||(48361745-48361952)
chr7 (18-122)||(35779937-35780041)
[»] chr4 (1 HSPs)
chr4 (18-290)||(9443048-9443317)
[»] chr1 (2 HSPs)
chr1 (55-140)||(26324200-26324285)
chr1 (185-228)||(5130810-5130853)
[»] scaffold0627 (2 HSPs)
scaffold0627 (59-140)||(4738-4819)
scaffold0627 (185-227)||(4663-4705)
[»] chr6 (1 HSPs)
chr6 (59-122)||(16716455-16716518)


Alignment Details
Target: chr5 (Bit Score: 119; Significance: 8e-61; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 9074616 - 9074885
Alignment:
Q  18 aaagggattactttacatttgtgactggatcttgttctctgatgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttac 117  Q
    ||||||||| |||||||||||||||||||  || || |||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  9074616 aaagggatttctttacatttgtgactggacatttttatctgatgtttcagtgtgggttatgaatgaatatggtattgaagaatcatggactaaagtttac 9074715  T
Q  118 aacatcaatacttcgttcaatccatctggcgatcgtacttcatggactacaaatttatgtttgcctataaaacactttgaagaaggtgctgccatattgt 217  Q
    |||||  |||||||||||||||| || |||  || || | |||||  | ||  ||||||   ||| ||||||||||||||||||||||||||||||||||    
T  9074716 aacattgatacttcgttcaatccttcgggctgtcttattacatggggttcaggtttatg---gccgataaaacactttgaagaaggtgctgccatattgt 9074812  T
Q  218 tacatcattcccaaaattgtttgatgtactatgaacctgaaaaatatgaattcaaacttttccgaatacatgg 290  Q
    || |||||| | | |||||||| || | |||||||||||| ||||||| ||||||| |||| ||||| |||||    
T  9074813 tatatcattgctacaattgttttatcttctatgaacctgagaaatatggattcaaagtttttcgaattcatgg 9074885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 8535714 - 8535448
Alignment:
Q  18 aaagggattactttacatttgtgactggatcttgttctctgatgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttac 117  Q
    ||||||||| |||||||||||||| | || ||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  8535714 aaagggatttctttacatttgtgattcgacctttttatctgatgtttcaatgtgggttatgaatgaatatggcattggagaatcatggactaagatttac 8535615  T
Q  118 aacatcaatacttcgttcaatccatctggcgatcgtacttcatggactacaaatttatgtttgcctataaaacactttgaagaaggtgctgccatattgt 217  Q
    |||||  ||||||| |||||||| || |    ||||  | || |||       |||| | | ||| ||||||||||||||||||||||||||||||||||    
T  8535614 aacattgatacttcattcaatccttcggaaagtcgtgttccacggagatatggtttaagctggccaataaaacactttgaagaaggtgctgccatattgt 8535515  T
Q  218 tacatcattcccaaaattgtttgatgtactatgaacctgaaaaatatgaattcaaacttttccgaat 284  Q
    || ||||||||   |||||||| || |||||||||||||| ||||||| |||| || |||| |||||    
T  8535514 tatatcattcctgcaattgttttatctactatgaacctgagaaatatggattcgaagtttttcgaat 8535448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 290
Target Start/End: Complemental strand, 8529156 - 8528887
Alignment:
Q  18 aaagggattactttacatttgtgactggatcttgttctctgatgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttac 117  Q
    ||||||||| || |||||||||||   || |||  | ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  8529156 aaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggcattggagaatcatggactaagatttac 8529057  T
Q  118 aacatcaatacttcgttcaatccatctggcgatcgtacttcatggactacaaatttatgtttgcctataaaacactttgaagaaggtgctgccatattgt 217  Q
    |||||| |||||||||||||||| | ||  ||||||  | || ||  |     |||| | | ||| ||||||||||||||||||||||||||||||||||    
T  8529056 aacatcgatacttcgttcaatcc-tttg--gatcgtgttccacggggttatggtttaagctggccgataaaacactttgaagaaggtgctgccatattgt 8528960  T
Q  218 tacatcattcccaaaattgtttgatgtactatgaacctgaaaaatatgaattcaaacttttccgaatacatgg 290  Q
     | ||||||||   |||||||| |  ||||| ||||||||||||||||  |||||| |||| ||||| |||||    
T  8528959 catatcattcctccaattgttttacctactacgaacctgaaaaatatgggttcaaagtttttcgaattcatgg 8528887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 1600193 - 1600313
Alignment:
Q  18 aaagggattactttacatttgtgactggatcttgttctctgatgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttac 117  Q
    ||||||||| ||||||||||||||||  | ||| || ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1600193 aaagggatttctttacatttgtgact--acctttttatctgatgttccaatgtgggttatgaaggaatatggcattgaagaatcatggactaaggtttac 1600290  T
Q  118 aacatcaatacttcgttcaatcc 140  Q
    ||   | ||||||| ||||||||    
T  1600291 aagtacgatacttcattcaatcc 1600313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 8637041 - 8636968
Alignment:
Q  57 tgatgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttacaacatcaatactt 130  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  8637041 tgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaacatcgatactt 8636968  T

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Target: chr5; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 57 - 122
Target Start/End: Complemental strand, 8644386 - 8644321
Alignment:
Q  57 tgatgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttacaacat 122  Q
    ||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  8644386 tgatgttgcaatgtgggttatgaatgaatatgacattggagaatcatggactaaggtttacaacat 8644321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 57 - 122
Target Start/End: Complemental strand, 8677988 - 8677923
Alignment:
Q  57 tgatgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttacaacat 122  Q
    ||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  8677988 tgatgttgcaatgtgggatatgaatgaatatggcattggagaatcatggactaaggtttacaacat 8677923  T

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Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 132
Target Start/End: Original strand, 2856824 - 2856897
Alignment:
Q  59 atgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttacaacatcaatacttcg 132  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||  ||||||||    
T  2856824 atgttacaatgtgggttatgaatgaatatggcattggagaatcatggactattgtttacaacattgatacttcg 2856897  T

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Target: chr5; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 132
Target Start/End: Original strand, 2874434 - 2874507
Alignment:
Q  59 atgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttacaacatcaatacttcg 132  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||  ||||||||    
T  2874434 atgttacaatgtgggttatgaatgaatatggcattggagaatcatggactattgtttacaacattgatacttcg 2874507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 65 - 122
Target Start/End: Original strand, 2904938 - 2904995
Alignment:
Q  65 caatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttacaacat 122  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  2904938 caatgtgggttatgaatgaatatggcattggagaatcatggactaagatttacaacat 2904995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 38 - 122
Target Start/End: Complemental strand, 8641564 - 8641480
Alignment:
Q  38 gtgactggatcttgttctctgatgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttacaacat 122  Q
    |||||| || ||| |||| ||||||  || ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  8641564 gtgactcgacctttttctttgatgtcacagtgtgggttatgaatgaatatggcattggagaatcatggactaaggcttacaacat 8641480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 132
Target Start/End: Original strand, 2844997 - 2845070
Alignment:
Q  59 atgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttacaacatcaatacttcg 132  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||  ||||||| |||  ||||||||    
T  2844997 atgttacaatgtgggttatgaatgaatatggcattggagaatcatggactattgtttacagcattgatacttcg 2845070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 171 - 284
Target Start/End: Complemental strand, 8677865 - 8677752
Alignment:
Q  171 tttatgtttgcctataaaacactttgaagaaggtgctgccatattgttacatcattcccaaaattgtttgatgtactatgaacctgaaaaatatgaattc 270  Q
    |||||||| |||  |||||||||||||||| |||||||||||||||||| ||||||||   |||||| | || ||||||||||| || ||| |||  |||    
T  8677865 tttatgttggccggtaaaacactttgaagagggtgctgccatattgttatatcattcctgcaattgtcttatctactatgaacccgagaaacatggtttc 8677766  T
Q  271 aaacttttccgaat 284  Q
    ||| |||| |||||    
T  8677765 aaagtttttcgaat 8677752  T

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Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 8548002 - 8548073
Alignment:
Q  18 aaagggattactttacatttgtgactggatcttgttctctgatgtttcaatgtgggttatgaatgaatatgg 89  Q
    ||||||||  ||||||||||||||||||| ||   ||||| ||||| |||||||||||||||| ||||||||    
T  8548002 aaagggatgtctttacatttgtgactggaactatctctcttatgttacaatgtgggttatgaacgaatatgg 8548073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 8636913 - 8636844
Alignment:
Q  185 taaaacactttgaagaaggtgctgccatattgttacatcattcccaaaattgtttgatgtactatgaacc 254  Q
    |||||||||||||||| || ||||||||||||||| ||||||||   |||||| | || |||||||||||    
T  8636913 taaaacactttgaagagggggctgccatattgttatatcattcctgcaattgtcttatctactatgaacc 8636844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 8548141 - 8548193
Alignment:
Q  175 tgtttgcctataaaacactttgaagaaggtgctgccatattgttacatcattc 227  Q
    ||||||||  |||||||||||||||| ||||||||| |||||||| |||||||    
T  8548141 tgtttgccggtaaaacactttgaagagggtgctgccgtattgttatatcattc 8548193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 219
Target Start/End: Original strand, 1600338 - 1600377
Alignment:
Q  180 gcctataaaacactttgaagaaggtgctgccatattgtta 219  Q
    ||| ||| ||||||||||||||||||||||||||||||||    
T  1600338 gccgatacaacactttgaagaaggtgctgccatattgtta 1600377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 254
Target Start/End: Complemental strand, 8644272 - 8644189
Alignment:
Q  171 tttatgtttgcctataaaacactttgaagaaggtgctgccatattgttacatcattcccaaaattgtttgatgtactatgaacc 254  Q
    |||||||| |||  ||||| |||||||||| || ||||||||||||||| ||||||||   |||||| | || |||||||||||    
T  8644272 tttatgttggccggtaaaaaactttgaagagggggctgccatattgttatatcattcctgcaattgtcttatctactatgaacc 8644189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 48361745 - 48361952
Alignment:
Q  18 aaagggattactttacatttgtgactggatcttgttctctgatgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttac 117  Q
    ||||||||| |||||||||||||||| || |||    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  48361745 aaagggatttctttacatttgtgactcgacctttgcatctgatgtttcaatgtgggttatgaatgaatatggtattgaagaatcatagactaaggtttac 48361844  T
Q  118 aacatcaatacttcgttcaatccatctggcgatcgtacttcatggactacaaatttatgtttgcctataaaacactttgaagaaggtgctgccatattgt 217  Q
    |||||||||||| |||||||||| ||  ||  |  | |||| |||  | ||  ||||||   ||| ||||||||||||||||||||||||||||||||||    
T  48361845 aacatcaatactgcgttcaatccttcgagcagttttgcttcttggcattcagctttatg---gccgataaaacactttgaagaaggtgctgccatattgt 48361941  T
Q  218 tacatcattcc 228  Q
    || ||||||||    
T  48361942 tatatcattcc 48361952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 35780041 - 35779937
Alignment:
Q  18 aaagggattactttacatttgtgactggatcttgttctctgatgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttac 117  Q
    ||||||||| |||||||||||||||| ||  || ||   ||||||| |||||||||||||||||||  |||||||||||||||| |||||||||||||||    
T  35780041 aaagggatttctttacatttgtgacttgaatttttttgttgatgttacaatgtgggttatgaatgagcatggcattgaagaatcgtggactaaggtttac 35779942  T
Q  118 aacat 122  Q
    |||||    
T  35779941 aacat 35779937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 290
Target Start/End: Complemental strand, 9443317 - 9443048
Alignment:
Q  18 aaagggattactttacatttgtgactggatcttgttctctgatgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttac 117  Q
    ||||||||| || |||||||||||   || |||  | ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  9443317 aaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggcattggagaatcatggactaagatttac 9443218  T
Q  118 aacatcaatacttcgttcaatccatctggcgatcgtacttcatggactacaaatttatgtttgcctataaaacactttgaagaaggtgctgccatattgt 217  Q
    |||||| |||||||||||||||| | ||  ||||||  | || ||  |     |||| | | ||| ||||||||||||||||||||||||||||||||||    
T  9443217 aacatcgatacttcgttcaatcc-tttg--gatcgtgttccacggggttatggtttaagctggccgataaaacactttgaagaaggtgctgccatattgt 9443121  T
Q  218 tacatcattcccaaaattgtttgatgtactatgaacctgaaaaatatgaattcaaacttttccgaatacatgg 290  Q
     | ||||||||   |||||||| |  ||||| ||||||||||||||||  |||||| |||| ||||| |||||    
T  9443120 catatcattccttcaattgttttacctactacgaacctgaaaaatatgggttcaaagtttttcgaattcatgg 9443048  T

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Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 55 - 140
Target Start/End: Original strand, 26324200 - 26324285
Alignment:
Q  55 tctgatgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttacaacatcaatacttcgttcaatcc 140  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||| || |||||||||||||    
T  26324200 tctgatgtttcaatgtgggttatgaatgaatatggcactggagaatcatggactaagatttacaacatcgatgcttcgttcaatcc 26324285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 228
Target Start/End: Complemental strand, 5130853 - 5130810
Alignment:
Q  185 taaaacactttgaagaaggtgctgccatattgttacatcattcc 228  Q
    |||||||||||||||| ||||||||||||||| || ||||||||    
T  5130853 taaaacactttgaagagggtgctgccatattgctatatcattcc 5130810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 59 - 140
Target Start/End: Complemental strand, 4819 - 4738
Alignment:
Q  59 atgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttacaacatcaatacttcgttcaatcc 140  Q
    ||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||| ||||||| || ||||||    
T  4819 atgttacaatgtgggttatgaatgaatatggcattggtgaatcatggactaaggtttaccacattaatactttgtacaatcc 4738  T

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Target: scaffold0627; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 4705 - 4663
Alignment:
Q  185 taaaacactttgaagaaggtgctgccatattgttacatcattc 227  Q
    |||||||||||||||| ||||||||  ||||||||||||||||    
T  4705 taaaacactttgaagagggtgctgctgtattgttacatcattc 4663  T

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Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 59 - 122
Target Start/End: Complemental strand, 16716518 - 16716455
Alignment:
Q  59 atgtttcaatgtgggttatgaatgaatatggcattgaagaatcatggactaaggtttacaacat 122  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  16716518 atgttacaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttaccacat 16716455  T

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